C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pleckstrin and Sec7 domain containing 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000441564 PSD4-003 ENSG00000125637 9606 + 2:113173997-113209396 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartMuscleOvaryPlacentaENST00000441564
Transcript ID Breast Heart Muscle Ovary Placenta
ENST00000441564 0.255±0.00 0.044±0.02 0.025±0.01 1.290±0.82 0.909±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000191 CIL_000191_0001 CGP 2:113107214-113209396
CIL_000196 CIL_000196_0001 CGP 2:113157325-113278950

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005086 IBA:IEA ARF guanyl-nucleotide exchange factor activity
GO:0005543 IEA phospholipid binding
GO:0005886 IEA plasma membrane
GO:0016020 IDA membrane
GO:0030054 IBA cell junction
GO:0030182 IBA neuron differentiation
GO:0032012 IEA regulation of ARF protein signal transduction
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166388 Psd4-201 protein_coding Mus_musculus 0 1537
ENSMUST00000056641 Psd4-002 protein_coding Mus_musculus 0 1537
ENSMUST00000102942 Psd4-001 protein_coding Mus_musculus 0 1537
ENSMUST00000140303 Psd4-009 processed_transcript Mus_musculus 0 276
ENSMUST00000132924 Psd4-008 processed_transcript Mus_musculus 0 211
ENSMUST00000127242 Psd4-007 processed_transcript Mus_musculus 2e-29 137
ENSMUST00000179332 5730455P16Rik-201 protein_coding Mus_musculus 0.000000007 69
ENSMUST00000103225 5730455P16Rik-001 protein_coding Mus_musculus 0.000000007 69
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.000004 60
ENSMUST00000168162 Pdgfra-202 protein_coding Mus_musculus 0.00002 58
ENSMUST00000000476 Pdgfra-201 protein_coding Mus_musculus 0.00002 58
ENSMUST00000024742 Nfkbie-201 protein_coding Mus_musculus 0.00006 57
ENSMUST00000157025 Ctr9-003 retained_intron Mus_musculus 0.0007 53
ENSMUST00000152019 Ctr9-002 retained_intron Mus_musculus 0.0007 53

Loading