C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000125772 GPCPD1 9606 - 20:5544439-5611026 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000379019 GPCPD1-001 5544439-5611026 protein_coding
  ENST00000418646 GPCPD1-004 5544439-5575508 protein_coding
  ENST00000462080 GPCPD1-006 5547341-5548381 processed_transcript
  ENST00000473797 GPCPD1-005 5567521-5574123 processed_transcript
  ENST00000481038 GPCPD1-002 5544439-5586037 processed_transcript
  ENST00000481690 GPCPD1-003 5575900-5610924 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000379019ENST00000418646ENST00000481038ENST00000481690
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000379019 2.256±0.00 3.367±0.00 4.195±1.46 7.636±6.94 2.715±1.41 2.240±0.75 2.302±0.16 1.755±1.41 8.729±6.75 3.050±0.54 6.662±2.37 3.725±0.31 4.913±1.36
ENST00000418646 N/A N/A N/A N/A N/A N/A N/A 0.194±0.00 1.138±0.00 N/A 2.582±0.00 N/A N/A
ENST00000481038 0.503±0.00 1.544±0.00 N/A 0.894±0.00 3.123±0.00 0.499±0.25 1.018±0.49 2.550±0.00 0.629±0.00 N/A 5.608±3.02 N/A N/A
ENST00000481690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.812±0.00 14.539±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00041F CIL_00041F_0001 CGP 20:5302040-5611026
CIL_00057F CIL_00057F_0001 CGP 20:5544439-5863912

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0006629 IEA lipid metabolic process
GO:0006644 TAS phospholipid metabolic process
GO:0007519 IEA skeletal muscle tissue development
GO:0008081 IEA phosphoric diester hydrolase activity
GO:0008152 IEA metabolic process
GO:0030246 IEA carbohydrate binding
GO:0044281 TAS small molecule metabolic process
GO:0046474 TAS glycerophospholipid biosynthetic process
GO:0047389 IEA glycerophosphocholine phosphodiesterase activity
GO:2001070 IEA starch binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016011 gpcpd1 glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000027346 Gpcpd1 glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) protein_coding Mus_musculus

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