C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027346 Gpcpd1 10090 - 2:132529082-132587729 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028822 Gpcpd1-006 132532726-132578133 protein_coding
  ENSMUST00000060955 Gpcpd1-001 132529082-132578233 protein_coding
  ENSMUST00000110135 Gpcpd1-011 132553957-132587729 protein_coding
  ENSMUST00000110136 Gpcpd1-004 132529082-132578187 protein_coding
  ENSMUST00000110142 Gpcpd1-201 132529083-132578248 protein_coding
  ENSMUST00000124107 Gpcpd1-010 132550462-132578187 protein_coding
  ENSMUST00000124632 Gpcpd1-012 132534152-132538127 nonsense_mediated_decay
  ENSMUST00000127712 Gpcpd1-007 132529082-132542031 retained_intron
  ENSMUST00000131617 Gpcpd1-008 132564627-132578246 processed_transcript
  ENSMUST00000140867 Gpcpd1-009 132554069-132578217 processed_transcript
  ENSMUST00000145694 Gpcpd1-002 132529082-132578248 nonsense_mediated_decay
  ENSMUST00000148833 Gpcpd1-005 132529082-132578178 nonsense_mediated_decay
  ENSMUST00000149854 Gpcpd1-003 132529082-132578235 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028822ENSMUST00000060955ENSMUST00000110136ENSMUST00000110142ENSMUST00000127712ENSMUST00000145694ENSMUST00000148833ENSMUST00000149854
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028822 1.981±0.43 0.897±0.70 N/A 3.699±0.00 N/A 0.836±0.13 N/A 0.686±0.06 5.249±2.01 2.323±0.27 N/A 2.772±1.32 5.371±2.25 2.655±1.24
ENSMUST00000060955 6.393±1.03 1.681±0.00 7.181±0.46 7.430±0.86 6.378±3.02 3.037±1.50 16.729±6.33 1.847±0.80 8.210±4.44 4.470±2.49 33.053±10.11 3.328±1.34 6.280±1.79 3.456±1.82
ENSMUST00000110136 N/A 0.847±0.00 N/A N/A N/A 0.759±0.00 N/A N/A 3.216±0.69 N/A N/A 2.474±0.00 3.322±0.00 N/A
ENSMUST00000110142 2.282±0.00 0.768±0.00 2.410±0.48 3.686±0.67 N/A N/A 6.775±0.92 2.017±0.57 4.040±2.29 1.828±0.00 N/A 1.230±0.00 4.061±1.27 1.852±0.09
ENSMUST00000127712 N/A 0.517±0.00 N/A 2.228±0.00 N/A N/A N/A N/A N/A 2.064±0.00 N/A 1.073±0.00 N/A 0.339±0.00
ENSMUST00000145694 N/A N/A N/A N/A N/A N/A N/A 1.037±0.00 N/A N/A N/A 1.960±0.00 N/A N/A
ENSMUST00000148833 4.923±0.00 2.674±1.12 N/A N/A 4.699±0.48 4.177±0.00 9.650±1.71 3.120±0.79 4.223±0.00 2.656±0.00 N/A 3.964±1.76 3.308±1.17 N/A
ENSMUST00000149854 N/A 4.727±0.00 2.051±0.00 5.488±0.81 2.979±1.80 1.335±0.33 N/A 0.559±0.00 6.375±2.27 4.561±2.14 N/A 3.760±1.23 4.960±0.00 2.042±0.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00041F CIL_00041F_0002 CGP 2:132337733-132587729
CIL_00057F CIL_00057F_0002 CGP 2:132529082-132751055

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006629 IEA lipid metabolic process
GO:0007519 IMP skeletal muscle tissue development
GO:0008152 IDA metabolic process
GO:0047389 IDA glycerophosphocholine phosphodiesterase activity
GO:2001070 IEA starch binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016011 gpcpd1 glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000125772 GPCPD1 glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) protein_coding Homo_sapiens

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