C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379019 GPCPD1-001 ENSG00000125772 9606 - 20:5544439-5611026 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000379019
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000379019 2.256±0.00 3.367±0.00 4.195±1.46 7.636±6.94 2.715±1.41 2.240±0.75 2.302±0.16 1.755±1.41 8.729±6.75 3.050±0.54 6.662±2.37 3.725±0.31 4.913±1.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00041F CIL_00041F_0001 CGP 20:5302040-5611026
CIL_00057F CIL_00057F_0001 CGP 20:5544439-5863912

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0006629 IEA lipid metabolic process
GO:0006644 TAS phospholipid metabolic process
GO:0007519 IEA skeletal muscle tissue development
GO:0008081 IEA phosphoric diester hydrolase activity
GO:0008152 IEA metabolic process
GO:0030246 IEA carbohydrate binding
GO:0044281 TAS small molecule metabolic process
GO:0046474 TAS glycerophospholipid biosynthetic process
GO:0047389 IEA glycerophosphocholine phosphodiesterase activity
GO:2001070 IEA starch binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110142 Gpcpd1-201 protein_coding Mus_musculus 0 3157
ENSMUST00000060955 Gpcpd1-001 protein_coding Mus_musculus 0 3157
ENSMUST00000110136 Gpcpd1-004 protein_coding Mus_musculus 0 2970
ENSMUST00000149854 Gpcpd1-003 nonsense_mediated_decay Mus_musculus 0 2767
ENSMUST00000145694 Gpcpd1-002 nonsense_mediated_decay Mus_musculus 0 2547
ENSMUST00000148833 Gpcpd1-005 nonsense_mediated_decay Mus_musculus 0 2547
ENSMUST00000028822 Gpcpd1-006 protein_coding Mus_musculus 0 2082
ENSMUST00000127712 Gpcpd1-007 retained_intron Mus_musculus 0 1683
ENSMUST00000124107 Gpcpd1-010 protein_coding Mus_musculus 0 665
ENSMUST00000110135 Gpcpd1-011 protein_coding Mus_musculus 0 608
ENSMUST00000124632 Gpcpd1-012 nonsense_mediated_decay Mus_musculus 0 564
ENSMUST00000140867 Gpcpd1-009 processed_transcript Mus_musculus 0 259
ENSMUST00000131617 Gpcpd1-008 processed_transcript Mus_musculus 2e-16 94

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