C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TNF receptor-associated protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000126602 TRAP1 9606 - 16:3651639-3717597 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000246957 TRAP1-001 3658037-3717597 protein_coding
  ENST00000538171 TRAP1-003 3658038-3717513 protein_coding
  ENST00000570403 TRAP1-009 3689052-3717512 nonsense_mediated_decay
  ENST00000570514 TRAP1-015 3674336-3676214 retained_intron
  ENST00000571011 TRAP1-007 3686100-3717524 nonsense_mediated_decay
  ENST00000571538 TRAP1-010 3679735-3691133 protein_coding
  ENST00000571804 TRAP1-008 3677498-3717516 nonsense_mediated_decay
  ENST00000573872 TRAP1-012 3666026-3677650 processed_transcript
  ENST00000574175 TRAP1-013 3672802-3677570 nonsense_mediated_decay
  ENST00000574494 TRAP1-017 3658038-3662267 retained_intron
  ENST00000574941 TRAP1-006 3678285-3717526 processed_transcript
  ENST00000575671 TRAP1-004 3658038-3678304 protein_coding
  ENST00000575707 TRAP1-016 3651639-3661990 nonsense_mediated_decay
  ENST00000575854 TRAP1-011 3674656-3677658 processed_transcript
  ENST00000576106 TRAP1-005 3678366-3717553 processed_transcript
  ENST00000576335 TRAP1-018 3666082-3689075 protein_coding
  ENST00000576788 TRAP1-014 3676094-3676946 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000246957ENST00000538171ENST00000575671
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000246957 16.863±0.00 9.655±0.00 6.245±0.00 22.438±9.96 14.565±7.27 10.120±5.51 21.942±13.60 19.073±8.41 17.832±15.34 8.509±4.67 45.991±37.29 17.870±8.20 19.662±5.22 21.151±6.07
ENST00000538171 7.129±0.00 12.362±0.00 N/A 9.984±0.00 14.781±0.00 8.987±0.00 N/A 11.894±4.76 21.892±0.00 5.910±0.00 21.370±6.80 16.812±3.79 14.601±3.67 19.790±1.47
ENST00000575671 N/A 6.675±0.00 N/A N/A 2.342±0.00 3.298±0.00 N/A N/A 2.001±0.00 N/A N/A 11.878±5.50 N/A 8.048±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000AY CIL_0000AY_0001 CGP 16:3581181-3680143
CIL_0000ON CIL_0000ON_0001 CGP 16:3611728-3717597
CIL_00029G CIL_00029G_0002 CGP 16:3651639-3880726

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005164 NAS tumor necrosis factor receptor binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005739 IDA mitochondrion
GO:0005743 IDA mitochondrial inner membrane
GO:0005758 ISS mitochondrial intermembrane space
GO:0005759 IDA mitochondrial matrix
GO:0005811 ISS lipid particle
GO:0006457 IEA protein folding
GO:0006950 IEA response to stress
GO:0016020 IDA membrane
GO:0019901 IPI protein kinase binding
GO:0044822 IDA poly(A) RNA binding
GO:0051082 IEA unfolded protein binding
GO:0061077 TAS chaperone-mediated protein folding
GO:0070062 IDA extracellular vesicular exosome
GO:1901856 IMP negative regulation of cellular respiration
GO:1902176 ISS negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway
GO:2000377 TAS regulation of reactive oxygen species metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000024317 trap1 TNF receptor-associated protein 1 protein_coding Danio_rerio
ENSDARG00000089242 trap1 TNF receptor-associated protein 1 protein_coding Danio_rerio
ENSMUSG00000005981 Trap1 TNF receptor-associated protein 1 protein_coding Mus_musculus

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