C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TNF receptor-associated protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000005981 Trap1 10090 - 16:4039971-4077827 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000006137 Trap1-001 4039971-4077827 protein_coding
  ENSMUST00000137945 Trap1-004 4040140-4044698 processed_transcript
  ENSMUST00000138594 Trap1-002 4065330-4077827 retained_intron
  ENSMUST00000150354 Trap1-003 4056416-4077775 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000006137ENSMUST00000138594
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000006137 77.030±8.90 98.603±36.44 41.796±0.63 33.297±7.91 61.237±7.47 40.994±4.93 61.385±2.93 168.512±48.08 83.706±15.41 30.922±3.32 63.751±1.40 72.500±8.57 41.182±15.13 35.146±4.88
ENSMUST00000138594 N/A 47.077±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000AY CIL_0000AY_0002 CGP 16:3979105-4040024
CIL_0000ON CIL_0000ON_0002 CGP 16:4036942-4077827
CIL_00029G CIL_00029G_0003 CGP 16:4039971-4213407

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0005743 ISS mitochondrial inner membrane
GO:0005758 ISS mitochondrial intermembrane space
GO:0005759 ISS mitochondrial matrix
GO:0005811 ISS lipid particle
GO:0006457 IEA protein folding
GO:0006950 IEA response to stress
GO:0016020 IEA membrane
GO:0019901 ISS protein kinase binding
GO:0044822 ISS poly(A) RNA binding
GO:0051082 IEA unfolded protein binding
GO:0070062 IEA extracellular vesicular exosome
GO:1901856 ISS negative regulation of cellular respiration
GO:1902176 ISS negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000024317 trap1 TNF receptor-associated protein 1 protein_coding Danio_rerio
ENSDARG00000089242 trap1 TNF receptor-associated protein 1 protein_coding Danio_rerio
ENSG00000126602 TRAP1 TNF receptor-associated protein 1 protein_coding Homo_sapiens

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