C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TNF receptor-associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000538171 TRAP1-003 ENSG00000126602 9606 - 16:3658038-3717513 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000538171
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000538171 7.129±0.00 12.362±0.00 9.984±0.00 14.781±0.00 8.987±0.00 11.894±4.76 21.892±0.00 5.910±0.00 21.370±6.80 16.812±3.79 14.601±3.67 19.790±1.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000AY CIL_0000AY_0001 CGP 16:3581181-3680143
CIL_0000ON CIL_0000ON_0001 CGP 16:3611728-3717597
CIL_00029G CIL_00029G_0002 CGP 16:3651639-3880726

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005164 NAS tumor necrosis factor receptor binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005739 IDA mitochondrion
GO:0005743 IDA mitochondrial inner membrane
GO:0005758 ISS mitochondrial intermembrane space
GO:0005759 IDA mitochondrial matrix
GO:0005811 ISS lipid particle
GO:0006457 IEA protein folding
GO:0006950 IEA response to stress
GO:0016020 IDA membrane
GO:0019901 IPI protein kinase binding
GO:0044822 IDA poly(A) RNA binding
GO:0051082 IEA unfolded protein binding
GO:0061077 TAS chaperone-mediated protein folding
GO:0070062 IDA extracellular vesicular exosome
GO:1901856 IMP negative regulation of cellular respiration
GO:1902176 ISS negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway
GO:2000377 TAS regulation of reactive oxygen species metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000006137 Trap1-001 protein_coding Mus_musculus 0 2006
ENSMUST00000137945 Trap1-004 processed_transcript Mus_musculus 0 248
ENSMUST00000150354 Trap1-003 nonsense_mediated_decay Mus_musculus 0 193

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