C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TNF receptor-associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000575671 TRAP1-004 ENSG00000126602 9606 - 16:3658038-3678304 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLiverOvaryTestisENST00000575671
Transcript ID Adrenal Breast Colon Liver Ovary Testis
ENST00000575671 6.675±0.00 2.342±0.00 3.298±0.00 2.001±0.00 11.878±5.50 8.048±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000AY CIL_0000AY_0001 CGP 16:3581181-3680143
CIL_0000ON CIL_0000ON_0001 CGP 16:3611728-3717597
CIL_00029G CIL_00029G_0002 CGP 16:3651639-3880726

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005739 IDA mitochondrion
GO:0006457 IEA protein folding
GO:0006950 IEA response to stress
GO:0051082 IEA unfolded protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000006137 Trap1-001 protein_coding Mus_musculus 0 1666
ENSMUST00000137945 Trap1-004 processed_transcript Mus_musculus 0 248
ENSMUST00000150354 Trap1-003 nonsense_mediated_decay Mus_musculus 0 193

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