C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, alpha 4a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000248437 TUBA4A-001 ENSG00000127824 9606 - 2:219249711-219254032 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaENST00000248437
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENST00000248437 31.969±0.00 34.070±15.58 15.677±0.00 17.043±0.00 4.796±0.00 34.053±0.00 3.080±0.00 60.684±0.00 17.627±9.55 8.909±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0001 VISTA 2:219106772-219707284
CIL_0006EH CIL_0006EH_0001 CGP 2:219236606-219250337
CIL_0006NV CIL_0006NV_0001 CGP 2:219245455-219278170

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0002576 TAS platelet degranulation
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005576 TAS extracellular region
GO:0005829 TAS cytosol
GO:0005874 IEA:IDA microtubule
GO:0006184 IEA GTP catabolic process
GO:0006457 TAS protein folding
GO:0007017 IEA microtubule-based process
GO:0007596 TAS blood coagulation
GO:0030168 TAS platelet activation
GO:0043234 IEA protein complex
GO:0044267 TAS cellular protein metabolic process
GO:0051084 TAS 'de novo' posttranslational protein folding
GO:0051258 IEA protein polymerization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000186213 Tuba4a-001 protein_coding Mus_musculus 0 2143
ENSMUST00000079464 Tuba4a-002 protein_coding Mus_musculus 0 2039
ENSMUST00000077577 Tuba1b-001 protein_coding Mus_musculus 0 1513
ENSMUST00000058914 Tuba1c-201 protein_coding Mus_musculus 0 1506
ENSMUST00000122404 Gm14150-001 processed_pseudogene Mus_musculus 0 1482
ENSMUST00000097014 Tuba1a-001 protein_coding Mus_musculus 0 1472
ENSMUST00000077991 Gm5620-001 processed_pseudogene Mus_musculus 0 1423
ENSMUST00000188593 Tuba4a-003 protein_coding Mus_musculus 0 1386
ENSMUST00000087445 Tuba3b-001 protein_coding Mus_musculus 0 1339
ENSMUST00000088246 Tuba3a-201 protein_coding Mus_musculus 0 1290
ENSMUST00000117877 Gm11873-001 processed_pseudogene Mus_musculus 0 1216
ENSDART00000102713 protein_coding Danio_rerio 0 1194
ENSDART00000016360 protein_coding Danio_rerio 0 1190
ENSDART00000040204 tuba8l2-001 protein_coding Danio_rerio 0 1179
ENSMUST00000078739 Gm17383-201 pseudogene Mus_musculus 0 1158
ENSDART00000102715 tuba8l3-001 protein_coding Danio_rerio 0 1138
ENSDART00000026292 tuba7l-201 protein_coding Danio_rerio 0 1064
ENSMUST00000136329 Tuba1a-003 processed_transcript Mus_musculus 0 944
ENSMUST00000120657 Gm12201-001 processed_pseudogene Mus_musculus 0 726
ENSMUST00000186971 Tuba4a-008 protein_coding Mus_musculus 0 691
ENSMUST00000121141 Gm3928-001 processed_pseudogene Mus_musculus 0 621
ENSMUST00000117552 Gm21998-001 processed_pseudogene Mus_musculus 0 610
ENSMUST00000187103 Tuba4a-005 retained_intron Mus_musculus 0 593
ENSMUST00000186758 Tuba4a-004 protein_coding Mus_musculus 0 499
ENSMUST00000190717 Tuba4a-006 protein_coding Mus_musculus 0 453
ENSMUST00000189131 Tuba4a-007 protein_coding Mus_musculus 0 418
ENSMUST00000029297 Slc7a11-001 protein_coding Mus_musculus 0 411
ENSDART00000122569 tuba8l2-002 processed_transcript Danio_rerio 0 298
ENSMUST00000027401 Stk16-001 protein_coding Mus_musculus 2e-22 111

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