C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, alpha 4a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000398989 TUBA4A-011 ENSG00000127824 9606 - 2:219250772-219277876 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleENST00000398989
Transcript ID Brain Muscle
ENST00000398989 41.625±0.00 46.255±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0001 VISTA 2:219106772-219707284
CIL_0006EH CIL_0006EH_0001 CGP 2:219236606-219250337
CIL_0006NV CIL_0006NV_0001 CGP 2:219245455-219278170

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0006184 IEA GTP catabolic process
GO:0043234 IEA protein complex
GO:0051258 IEA protein polymerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000188593 Tuba4a-003 protein_coding Mus_musculus 0 778
ENSMUST00000079464 Tuba4a-002 protein_coding Mus_musculus 0 778
ENSMUST00000186213 Tuba4a-001 protein_coding Mus_musculus 0 778
ENSMUST00000077577 Tuba1b-001 protein_coding Mus_musculus 0 634
ENSMUST00000058914 Tuba1c-201 protein_coding Mus_musculus 0 623
ENSMUST00000077991 Gm5620-001 processed_pseudogene Mus_musculus 0 617
ENSMUST00000078739 Gm17383-201 pseudogene Mus_musculus 0 604
ENSMUST00000122404 Gm14150-001 processed_pseudogene Mus_musculus 0 599
ENSMUST00000136329 Tuba1a-003 processed_transcript Mus_musculus 0 590
ENSMUST00000097014 Tuba1a-001 protein_coding Mus_musculus 0 590
ENSMUST00000186971 Tuba4a-008 protein_coding Mus_musculus 0 566
ENSDART00000016360 protein_coding Danio_rerio 0 556
ENSDART00000102713 protein_coding Danio_rerio 0 556
ENSDART00000102715 tuba8l3-001 protein_coding Danio_rerio 0 542
ENSDART00000040204 tuba8l2-001 protein_coding Danio_rerio 0 534
ENSDART00000026292 tuba7l-201 protein_coding Danio_rerio 0 486
ENSMUST00000117877 Gm11873-001 processed_pseudogene Mus_musculus 0 446
ENSMUST00000120657 Gm12201-001 processed_pseudogene Mus_musculus 0 315
ENSDART00000122569 tuba8l2-002 processed_transcript Danio_rerio 0 298
ENSMUST00000187103 Tuba4a-005 retained_intron Mus_musculus 0 237
ENSMUST00000029297 Slc7a11-001 protein_coding Mus_musculus 0 213

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