C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, alpha 4a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000425551 TUBA4A-009 ENSG00000127824 9606 - 2:219251587-219252993 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0001 VISTA 2:219106772-219707284
CIL_0006EH CIL_0006EH_0001 CGP 2:219236606-219250337
CIL_0006NV CIL_0006NV_0001 CGP 2:219245455-219278170

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005525 IEA GTP binding
GO:0005874 IEA microtubule
GO:0007017 IEA microtubule-based process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000187103 Tuba4a-005 retained_intron Mus_musculus 0 512
ENSMUST00000186213 Tuba4a-001 protein_coding Mus_musculus 0 512
ENSMUST00000079464 Tuba4a-002 protein_coding Mus_musculus 0 508
ENSMUST00000186758 Tuba4a-004 protein_coding Mus_musculus 0 499
ENSMUST00000186971 Tuba4a-008 protein_coding Mus_musculus 0 492
ENSMUST00000190717 Tuba4a-006 protein_coding Mus_musculus 0 453
ENSMUST00000120657 Gm12201-001 processed_pseudogene Mus_musculus 0 440
ENSMUST00000189131 Tuba4a-007 protein_coding Mus_musculus 0 418
ENSMUST00000087445 Tuba3b-001 protein_coding Mus_musculus 0 339
ENSMUST00000188593 Tuba4a-003 protein_coding Mus_musculus 0 315
ENSMUST00000088246 Tuba3a-201 protein_coding Mus_musculus 0 296
ENSMUST00000117552 Gm21998-001 processed_pseudogene Mus_musculus 2e-38 163
ENSMUST00000121141 Gm3928-001 processed_pseudogene Mus_musculus 2e-38 163

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