C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox D3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000249440 HOXD3-001 ENSG00000128652 9606 + 2:176164077-176173102 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeLungPlacentaTestisENST00000249440
Transcript ID Adipose Lung Placenta Testis
ENST00000249440 0.691±0.00 0.030±0.00 0.056±0.00 2.861±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0001 UCNEbase 2:175103181-177219808
CIL_00090A CIL_00090A_0001 VISTA 2:175589301-176190657
CIL_0008JZ CIL_0008JZ_0001 VISTA 2:175775342-176376682
CIL_00017M CIL_00017M_0001 CGP 2:176129694-176173102

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IC nucleus
GO:0006351 IMP transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007160 IDA cell-matrix adhesion
GO:0007219 IMP Notch signaling pathway
GO:0009952 ISS anterior/posterior pattern specification
GO:0010628 IMP positive regulation of gene expression
GO:0030878 ISS thyroid gland development
GO:0043565 IEA sequence-specific DNA binding
GO:0045666 ISS positive regulation of neuron differentiation
GO:0048704 ISS embryonic skeletal system morphogenesis
GO:0051216 ISS cartilage development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047830 Hoxd3-005 protein_coding Mus_musculus 0 2486
ENSMUST00000053932 HOXD3-001 nonsense_mediated_decay Mus_musculus 0 2453
ENSMUST00000111982 Hoxd3-004 protein_coding Mus_musculus 0 2453
ENSMUST00000111983 Hoxd3-001 protein_coding Mus_musculus 0 2453
ENSMUST00000190553 Hoxd3-008 retained_intron Mus_musculus 0 1688
ENSMUST00000140666 Hoxd3-007 protein_coding Mus_musculus 0 366
ENSMUST00000144544 Hoxd3-006 protein_coding Mus_musculus 0 322
ENSMUST00000114434 Hoxa3-001 protein_coding Mus_musculus 0 313
ENSMUST00000055334 Hoxb3-001 protein_coding Mus_musculus 0 252
ENSMUST00000093944 Hoxb3-002 protein_coding Mus_musculus 0 252
ENSMUST00000123805 Hoxb1-002 processed_transcript Mus_musculus 0.000000000002 79
ENSMUST00000019117 Hoxb1-001 protein_coding Mus_musculus 0.000000000002 79
ENSMUST00000047904 Hoxd4-201 protein_coding Mus_musculus 0.00000002 66
ENSMUST00000111980 Hoxd4-001 protein_coding Mus_musculus 0.00000002 66
ENSMUST00000144040 Hoxd4-002 processed_transcript Mus_musculus 0.00000002 66

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