C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: methyl-CpG binding domain protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000429544 MBD4-003 ENSG00000129071 9606 - 3:129430944-129440029 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000429544
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000429544 4.533±0.00 7.690±0.00 2.216±0.00 4.392±0.39 4.210±0.16 3.529±0.00 1.618±0.77 6.975±0.00 3.263±1.11 3.788±0.00 0.986±0.00 5.456±3.10 3.281±1.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00030X CIL_00030X_0001 CGP 3:129401321-129440179
CIL_00030Y CIL_00030Y_0001 CGP 3:129430944-129520507

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000737 TAS DNA catabolic process, endonucleolytic
GO:0003677 IEA DNA binding
GO:0003696 TAS satellite DNA binding
GO:0003824 IEA catalytic activity
GO:0004520 TAS endodeoxyribonuclease activity
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006281 TAS:IEA DNA repair
GO:0006284 TAS:IEA base-excision repair
GO:0006285 TAS base-excision repair, AP site formation
GO:0008263 IDA pyrimidine-specific mismatch base pair DNA N-glycosylase activity
GO:0045008 TAS depyrimidination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000147282 Mbd4-002 nonsense_mediated_decay Mus_musculus 0 706
ENSMUST00000032469 Mbd4-001 protein_coding Mus_musculus 0 706
ENSMUST00000133830 Mbd4-004 processed_transcript Mus_musculus 0 614
ENSMUST00000122816 Mbd4-003 retained_intron Mus_musculus 0 418

Loading