C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: methyl-CpG binding domain protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000507208 MBD4-009 ENSG00000129071 9606 - 3:129432176-129440035 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastKidneyLungMuscleOvaryPlacentaENST00000507208
Transcript ID Breast Kidney Lung Muscle Ovary Placenta
ENST00000507208 2.600±0.34 4.056±1.65 3.124±0.00 1.262±0.00 3.488±2.01 2.882±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00030X CIL_00030X_0001 CGP 3:129401321-129440179
CIL_00030Y CIL_00030Y_0001 CGP 3:129430944-129520507

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000737 TAS DNA catabolic process, endonucleolytic
GO:0003677 IEA DNA binding
GO:0003696 TAS satellite DNA binding
GO:0003824 IEA catalytic activity
GO:0004520 TAS endodeoxyribonuclease activity
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006281 TAS:IEA DNA repair
GO:0006284 TAS:IEA base-excision repair
GO:0006285 TAS base-excision repair, AP site formation
GO:0008263 IDA pyrimidine-specific mismatch base pair DNA N-glycosylase activity
GO:0045008 TAS depyrimidination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032469 Mbd4-001 protein_coding Mus_musculus 0 628
ENSMUST00000147282 Mbd4-002 nonsense_mediated_decay Mus_musculus 0 590
ENSMUST00000133830 Mbd4-004 processed_transcript Mus_musculus 0 496
ENSMUST00000122816 Mbd4-003 retained_intron Mus_musculus 0 418

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