C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: methyl-CpG binding domain protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000503197 MBD4-002 ENSG00000129071 9606 - 3:129431266-129440007 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000503197
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000503197 3.978±0.00 7.032±0.00 5.108±0.00 2.685±0.00 4.155±0.00 3.534±0.00 5.718±0.00 5.269±0.00 3.216±1.34 1.881±1.27 4.577±1.14 2.768±0.47 11.836±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00030X CIL_00030X_0001 CGP 3:129401321-129440179
CIL_00030Y CIL_00030Y_0001 CGP 3:129430944-129520507

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000737 TAS DNA catabolic process, endonucleolytic
GO:0003677 IEA DNA binding
GO:0003696 TAS satellite DNA binding
GO:0003824 IEA catalytic activity
GO:0004520 TAS endodeoxyribonuclease activity
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006281 TAS:IEA DNA repair
GO:0006284 TAS base-excision repair
GO:0006285 TAS base-excision repair, AP site formation
GO:0008263 IDA pyrimidine-specific mismatch base pair DNA N-glycosylase activity
GO:0045008 TAS depyrimidination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032469 Mbd4-001 protein_coding Mus_musculus 0 551
ENSMUST00000147282 Mbd4-002 nonsense_mediated_decay Mus_musculus 0 512
ENSMUST00000122816 Mbd4-003 retained_intron Mus_musculus 0 418
ENSMUST00000133830 Mbd4-004 processed_transcript Mus_musculus 0 418

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