C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sorting nexin 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000129515 SNX6 9606 - 14:34561094-34630183 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000362031 SNX6-002 34562409-34630183 protein_coding
  ENST00000396526 SNX6-001 34561094-34630109 protein_coding
  ENST00000555416 SNX6-004 34567892-34630154 nonsense_mediated_decay
  ENST00000555541 SNX6-010 34575591-34586316 retained_intron
  ENST00000555648 SNX6-009 34605682-34629672 protein_coding
  ENST00000556162 SNX6-003 34562660-34630158 nonsense_mediated_decay
  ENST00000556303 SNX6-007 34605487-34630154 retained_intron
  ENST00000556712 SNX6-008 34586230-34630133 nonsense_mediated_decay
  ENST00000557265 SNX6-005 34586230-34630158 protein_coding
  ENST00000557341 SNX6-006 34603365-34630153 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000362031ENST00000396526ENST00000556162ENST00000557265
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000362031 11.921±0.00 9.327±0.00 3.092±0.00 7.880±0.43 12.003±1.49 9.323±2.47 8.083±4.69 11.735±9.48 5.346±1.42 8.348±1.51 6.616±0.00 11.745±4.50 14.428±3.97 13.660±2.21
ENST00000396526 N/A N/A N/A 2.559±0.00 N/A N/A N/A 1.270±0.00 N/A N/A N/A 11.073±6.50 7.677±0.00 11.597±0.00
ENST00000556162 N/A N/A N/A N/A N/A N/A 2.363±0.00 1.009±0.00 N/A N/A 2.486±0.00 N/A N/A N/A
ENST00000557265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.892±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RR CIL_0008RR_0001 VISTA 14:33972978-34576380
CIL_0005RF CIL_0005RF_0002 CGP 14:34515929-34630183
CIL_0005RE CIL_0005RE_0002 CGP 14:34561094-34714823

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005622 NAS intracellular
GO:0005634 IEA nucleus
GO:0005737 IDA:IEA cytoplasm
GO:0006886 NAS intracellular protein transport
GO:0007175 NAS negative regulation of epidermal growth factor-activated receptor activity
GO:0030512 IDA negative regulation of transforming growth factor beta receptor signaling pathway
GO:0031410 IEA cytoplasmic vesicle
GO:0031901 IDA early endosome membrane
GO:0034713 IEA type I transforming growth factor beta receptor binding
GO:0035091 IBA:IEA phosphatidylinositol binding
GO:0042147 IMP retrograde transport, endosome to Golgi
GO:0042803 IPI protein homodimerization activity
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058444 snx6 sorting nexin 6 protein_coding Danio_rerio
ENSMUSG00000005656 Snx6 sorting nexin 6 protein_coding Mus_musculus

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