C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005RE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000058444-ENSDARG00000014106 CGP 7955 17:9828220-9890018
GeneTranscriptPositionBiotype
ENSDARG00000014106 (cfl2)
cofilin 2 (muscle) 		ENSDART00000008355 (cfl2-001) 9871855-9890018 protein_coding
ENSDARG00000058444 (snx6)
sorting nexin 6 		ENSDART00000148463 (snx6-001) 9828220-9860451 protein_coding
CIL_0005RE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000129515-ENSG00000165410 CGP 9606 14:34561094-34714823
GeneTranscriptPositionBiotype
ENSG00000129515 (SNX6)
sorting nexin 6 		ENST00000362031 (SNX6-002) 34562409-34630183 protein_coding
ENST00000396526 (SNX6-001) 34561094-34630109 protein_coding
ENST00000555416 (SNX6-004) 34567892-34630154 nonsense_mediated_decay
ENST00000555541 (SNX6-010) 34575591-34586316 retained_intron
ENST00000555648 (SNX6-009) 34605682-34629672 protein_coding
ENST00000556162 (SNX6-003) 34562660-34630158 nonsense_mediated_decay
ENST00000556303 (SNX6-007) 34605487-34630154 retained_intron
ENST00000556712 (SNX6-008) 34586230-34630133 nonsense_mediated_decay
ENST00000557265 (SNX6-005) 34586230-34630158 protein_coding
ENST00000557341 (SNX6-006) 34603365-34630153 nonsense_mediated_decay
ENSG00000165410 (CFL2)
cofilin 2 (muscle) 		ENST00000298159 (CFL2-001) 34706769-34714690 protein_coding
ENST00000341223 (CFL2-002) 34710387-34713828 protein_coding
ENST00000422678 (CFL2-003) 34712037-34714577 nonsense_mediated_decay
ENST00000554470 (CFL2-004) 34712008-34714823 nonsense_mediated_decay
ENST00000555765 (CFL2-005) 34712852-34714555 protein_coding
ENST00000556161 (CFL2-006) 34712858-34714236 protein_coding
ENSG00000240463 (RPS19P3)
ribosomal protein S19 pseudogene 3 		ENST00000480487 (RPS19P3-001) 34568689-34569129 processed_pseudogene
ENSG00000241582 (RP11-434O22.2)
 ENST00000479812 (RP11-434O22.2-001) 34694170-34694644 processed_pseudogene
ENSG00000275978 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000613350 (Metazoa_SRP.1-345) 34659564-34659878 misc_RNA
CIL_0005RE_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000005656-ENSMUSG00000062929 CGP 10090 12:54746349-54862877
GeneTranscriptPositionBiotype
ENSMUSG00000005656 (Snx6)
sorting nexin 6 		ENSMUST00000005798 (Snx6-201) 54746349-54795703 protein_coding
ENSMUSG00000062929 (Cfl2)
cofilin 2, muscle 		ENSMUST00000078124 (Cfl2-201) 54858817-54862877 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005RE_0001ENSDARG00000014106ENSDART00000008355ENSDARG00000058444ENSDART00000148463CIL_0005RE_0002ENSG00000129515ENST00000362031ENST00000396526ENST00000555416ENST00000555541ENST00000555648ENST00000556162ENST00000556303ENST00000556712ENST00000557265ENST00000557341ENSG00000165410ENST00000298159ENST00000341223ENST00000422678ENST00000554470ENST00000555765ENST00000556161ENSG00000240463ENST00000480487ENSG00000241582ENST00000479812ENSG00000275978ENST00000613350CIL_0005RE_0003ENSMUSG00000005656ENSMUST00000005798ENSMUSG00000062929ENSMUST00000078124
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005RE_0001ENSDARG00000014106ENSDART00000008355ENSDARG00000058444ENSDART00000148463CIL_0005RE_0002ENSG00000129515ENST00000362031ENST00000396526ENST00000556162ENST00000557265ENSG00000165410ENST00000298159ENST00000341223ENST00000422678ENST00000554470ENST00000555765ENST00000556161ENSG00000240463ENST00000480487ENSG00000241582ENST00000479812ENSG00000275978ENST00000613350CIL_0005RE_0003ENSMUSG00000005656ENSMUST00000005798ENSMUSG00000062929ENSMUST00000078124
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000014106 ENSDART00000008355 N/A N/A N/A 1.058±0.42 N/A N/A 34.663±6.73 10.726±0.52 1.338±0.00 N/A 57.841±0.00 N/A N/A N/A
ENSDARG00000058444 ENSDART00000148463 N/A N/A N/A 7.118±4.83 N/A N/A 4.907±2.12 10.326±1.48 0.268±0.00 N/A 0.960±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000129515 ENST00000362031 11.921±0.00 9.327±0.00 3.092±0.00 7.880±0.43 12.003±1.49 9.323±2.47 8.083±4.69 11.735±9.48 5.346±1.42 8.348±1.51 6.616±0.00 11.745±4.50 14.428±3.97 13.660±2.21
ENST00000396526 N/A N/A N/A 2.559±0.00 N/A N/A N/A 1.270±0.00 N/A N/A N/A 11.073±6.50 7.677±0.00 11.597±0.00
ENST00000555416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555541 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555648 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556162 N/A N/A N/A N/A N/A N/A 2.363±0.00 1.009±0.00 N/A N/A 2.486±0.00 N/A N/A N/A
ENST00000556303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556712 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.892±0.00 N/A N/A
ENST00000557341 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000165410 ENST00000298159 N/A 1.112±0.00 0.654±0.00 N/A N/A N/A N/A N/A N/A 0.620±0.00 N/A N/A N/A N/A
ENST00000341223 9.731±0.00 1.971±0.00 1.233±0.00 10.187±3.66 5.126±1.77 6.103±0.49 23.786±10.90 8.278±0.00 12.706±9.65 3.773±0.00 20.464±3.64 5.350±2.11 5.692±1.58 11.984±5.71
ENST00000422678 N/A N/A N/A 7.369±0.00 5.787±0.00 N/A 11.890±0.00 N/A N/A N/A 34.859±0.00 5.275±1.46 6.293±1.28 5.495±0.00
ENST00000554470 13.622±0.00 8.313±0.00 1.547±0.00 50.596±0.00 17.483±0.00 26.211±0.00 49.579±0.00 10.272±0.00 17.640±0.00 12.134±0.00 92.009±0.00 7.542±3.66 6.021±0.00 17.549±8.72
ENST00000555765 N/A N/A N/A 40.571±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556161 N/A N/A 12.530±0.00 51.270±0.00 31.396±0.00 30.320±0.00 65.945±0.00 53.726±0.00 97.745±0.00 28.754±0.00 274.276±0.00 14.852±0.00 7.263±0.00 N/A
ENSG00000240463 ENST00000480487 0.677±0.00 2.353±0.00 2.724±0.00 0.596±0.00 2.673±1.34 0.856±0.57 0.492±0.27 0.123±0.00 0.997±0.78 1.085±0.52 1.541±1.39 1.406±1.06 0.349±0.00 0.508±0.03
ENSG00000241582 ENST00000479812 N/A N/A 0.249±0.00 N/A N/A 0.042±0.00 N/A N/A 0.080±0.00 0.045±0.00 0.038±0.00 N/A 0.111±0.00 0.226±0.07
ENSG00000275978 ENST00000613350 0.108±0.00 0.212±0.00 N/A 0.059±0.00 0.157±0.00 N/A 0.051±0.00 0.108±0.00 N/A 0.093±0.00 N/A 0.403±0.00 0.272±0.00 0.678±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005656 ENSMUST00000005798 10.710±1.45 5.448±2.94 26.336±2.66 21.621±6.83 7.163±1.04 6.466±1.76 4.695±0.49 20.884±2.65 9.466±6.25 7.721±0.90 6.584±0.75 14.180±12.36 54.621±19.95 3.266±1.28
ENSMUSG00000062929 ENSMUST00000078124 6.952±2.73 6.896±1.61 36.358±3.93 9.549±3.08 7.514±5.21 6.419±2.06 21.573±7.76 7.991±2.69 5.610±2.20 13.062±2.15 97.738±9.37 4.410±1.64 13.756±4.07 7.105±1.44

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