C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: scaffold attachment factor B2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000130254 SAFB2 9606 - 19:5586999-5624046 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000252542 SAFB2-001 5586999-5622980 protein_coding
  ENST00000585449 SAFB2-011 5598485-5600172 retained_intron
  ENST00000587802 SAFB2-010 5587110-5589020 processed_transcript
  ENST00000589925 SAFB2-008 5587868-5593705 processed_transcript
  ENST00000590000 SAFB2-009 5591296-5592881 retained_intron
  ENST00000590262 SAFB2-004 5612520-5624046 protein_coding
  ENST00000591101 SAFB2-007 5600214-5610235 retained_intron
  ENST00000591120 SAFB2-002 5611876-5622776 nonsense_mediated_decay
  ENST00000591123 SAFB2-005 5598832-5616278 nonsense_mediated_decay
  ENST00000591310 SAFB2-006 5600226-5610611 processed_transcript
  ENST00000592599 SAFB2-003 5600200-5612473 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000252542ENST00000587802ENST00000589925ENST00000591101ENST00000591120ENST00000591123ENST00000592599
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000252542 15.578±0.00 24.341±0.00 4.600±0.00 12.009±11.13 5.389±4.57 12.519±0.00 4.285±4.14 3.054±2.07 3.470±1.89 6.588±0.00 4.982±4.42 18.011±5.36 9.848±2.83 23.187±1.31
ENST00000587802 N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.920±0.00 N/A N/A N/A N/A
ENST00000589925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.954±0.00 N/A N/A N/A
ENST00000591101 N/A N/A N/A 6.077±0.00 12.187±0.00 17.581±0.00 N/A 15.124±0.00 16.071±0.00 10.426±0.00 7.988±0.00 N/A N/A N/A
ENST00000591120 N/A N/A 11.181±0.00 1.887±0.00 N/A 6.772±0.00 0.678±0.00 2.253±0.00 2.534±0.00 4.932±0.00 N/A N/A N/A N/A
ENST00000591123 N/A N/A N/A N/A N/A N/A 7.391±0.00 N/A N/A N/A 4.495±0.00 N/A N/A 16.281±0.00
ENST00000592599 N/A N/A N/A N/A N/A N/A N/A 1.051±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003JF CIL_0003JF_0001 CGP 19:5455431-5624046
CIL_0003UZ CIL_0003UZ_0001 CGP 19:5586999-5668478

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0042802 IPI identical protein binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020467 safb scaffold attachment factor B protein_coding Danio_rerio
ENSMUSG00000042625 Safb2 scaffold attachment factor B2 protein_coding Mus_musculus

Loading