C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: scaffold attachment factor B2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000042625 Safb2 10090 - 17:56560965-56584585 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000075510 Safb2-001 56562939-56584585 protein_coding
  ENSMUST00000124111 Safb2-007 56560973-56564567 protein_coding
  ENSMUST00000124457 Safb2-011 56568895-56575097 retained_intron
  ENSMUST00000127947 Safb2-013 56567533-56569434 retained_intron
  ENSMUST00000131056 Safb2-014 56565997-56571438 protein_coding
  ENSMUST00000133604 Safb2-004 56568991-56584524 nonsense_mediated_decay
  ENSMUST00000134497 Safb2-012 56571026-56571677 retained_intron
  ENSMUST00000134741 Safb2-005 56570081-56575519 retained_intron
  ENSMUST00000140037 Safb2-010 56576331-56583046 retained_intron
  ENSMUST00000142752 Safb2-017 56560965-56564516 protein_coding
  ENSMUST00000142940 Safb2-006 56562939-56567015 protein_coding
  ENSMUST00000144255 Safb2-003 56562939-56584512 nonsense_mediated_decay
  ENSMUST00000146070 Safb2-008 56578873-56584511 retained_intron
  ENSMUST00000146958 Safb2-009 56576460-56584301 retained_intron
  ENSMUST00000154991 Safb2-015 56563305-56567018 protein_coding
  ENSMUST00000155983 Safb2-002 56571268-56584562 nonsense_mediated_decay
  ENSMUST00000156640 Safb2-016 56562949-56572498 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000075510ENSMUST00000124111ENSMUST00000124457ENSMUST00000134741ENSMUST00000140037ENSMUST00000142940ENSMUST00000144255ENSMUST00000146070ENSMUST00000146958ENSMUST00000154991ENSMUST00000156640
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000075510 7.104±1.88 7.232±0.72 15.031±3.46 17.152±7.02 8.742±2.14 11.086±1.81 4.366±1.04 8.957±0.80 11.498±6.68 19.179±5.67 6.135±1.50 26.464±11.60 15.726±4.36 24.085±3.61
ENSMUST00000124111 N/A 3.791±0.24 N/A 2.623±0.00 4.159±1.68 4.468±0.00 1.783±0.08 N/A N/A N/A N/A 7.737±2.14 N/A N/A
ENSMUST00000124457 N/A N/A N/A 95.928±0.00 N/A N/A N/A N/A N/A N/A N/A 210.809±0.00 91.326±19.02 140.316±0.00
ENSMUST00000134741 5.269±1.70 N/A N/A 5.487±1.47 4.062±0.89 N/A 2.658±0.31 N/A 4.330±0.02 N/A 3.106±0.40 N/A 10.971±0.16 N/A
ENSMUST00000140037 10.647±2.49 N/A N/A N/A N/A N/A 3.974±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142940 N/A N/A N/A N/A N/A N/A N/A 8.414±0.46 4.581±0.74 N/A N/A N/A N/A N/A
ENSMUST00000144255 4.025±0.67 5.775±0.65 N/A N/A N/A 5.977±0.75 3.630±0.69 4.328±0.37 3.866±0.00 6.554±0.00 N/A 11.042±1.56 N/A 8.185±0.00
ENSMUST00000146070 N/A N/A N/A 136.954±0.00 N/A N/A N/A N/A N/A N/A N/A 356.780±0.00 129.656±34.02 247.244±0.00
ENSMUST00000146958 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 37.959±0.00 N/A N/A
ENSMUST00000154991 N/A N/A N/A 39.264±19.86 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156640 N/A 36.050±3.95 N/A N/A 39.791±15.63 40.635±6.88 17.298±0.00 25.145±3.15 20.804±6.01 54.943±7.85 N/A 41.977±0.55 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003JF CIL_0003JF_0002 CGP 17:56511248-56584585
CIL_0003UZ CIL_0003UZ_0002 CGP 17:56560965-56606294

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process
GO:0042802 IEA identical protein binding
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020467 safb scaffold attachment factor B protein_coding Danio_rerio
ENSG00000130254 SAFB2 scaffold attachment factor B2 protein_coding Homo_sapiens

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