C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: scaffold attachment factor B2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000252542 SAFB2-001 ENSG00000130254 9606 - 19:5586999-5622980 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000252542
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000252542 15.578±0.00 24.341±0.00 4.600±0.00 12.009±11.13 5.389±4.57 12.519±0.00 4.285±4.14 3.054±2.07 3.470±1.89 6.588±0.00 4.982±4.42 18.011±5.36 9.848±2.83 23.187±1.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003JF CIL_0003JF_0001 CGP 19:5455431-5624046
CIL_0003UZ CIL_0003UZ_0001 CGP 19:5586999-5668478

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0042802 IPI identical protein binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075510 Safb2-001 protein_coding Mus_musculus 0 1214
ENSMUST00000133604 Safb2-004 nonsense_mediated_decay Mus_musculus 0 508
ENSMUST00000095224 Safb-001 protein_coding Mus_musculus 0 387
ENSMUST00000182533 Safb-006 protein_coding Mus_musculus 0 387
ENSMUST00000182378 Safb-004 retained_intron Mus_musculus 0 261
ENSMUST00000182800 Safb-011 protein_coding Mus_musculus 1.96182e-44 185
ENSMUST00000182031 Safb-002 retained_intron Mus_musculus 1.96182e-44 185
ENSMUST00000134741 Safb2-005 retained_intron Mus_musculus 2e-40 172
ENSMUST00000182913 Safb-007 retained_intron Mus_musculus 2e-17 94
ENSMUST00000182454 Safb-005 retained_intron Mus_musculus 4e-17 94

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