C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: selenocysteine lyase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000132330 SCLY 9606 + 2:238060889-238099413 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000254663 SCLY-001 238060889-238099413 protein_coding
  ENST00000409736 SCLY-003 238061031-238092083 protein_coding
  ENST00000412508 SCLY-011 238061054-238098219 protein_coding
  ENST00000413463 SCLY-008 238061001-238082202 protein_coding
  ENST00000416757 SCLY-013 238061091-238069836 protein_coding
  ENST00000423324 SCLY-010 238061043-238083303 nonsense_mediated_decay
  ENST00000431487 SCLY-019 238069457-238083246 protein_coding
  ENST00000433750 SCLY-017 238083246-238094849 protein_coding
  ENST00000437134 SCLY-020 238069464-238099359 protein_coding
  ENST00000440143 SCLY-021 238082101-238091523 protein_coding
  ENST00000443532 SCLY-012 238061082-238082221 nonsense_mediated_decay
  ENST00000446202 SCLY-009 238061020-238081741 nonsense_mediated_decay
  ENST00000450965 SCLY-006 238081735-238099413 protein_coding
  ENST00000463433 SCLY-018 238091218-238096186 retained_intron
  ENST00000480357 SCLY-002 238060928-238099412 retained_intron
  ENST00000480859 SCLY-015 238061293-238081726 processed_transcript
  ENST00000482031 SCLY-016 238064360-238083075 retained_intron
  ENST00000487197 SCLY-014 238061113-238065095 retained_intron
  ENST00000497256 SCLY-007 238060966-238068231 retained_intron
  ENST00000497951 SCLY-005 238078565-238091473 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverOvaryENST00000254663ENST00000409736ENST00000446202ENST00000450965ENST00000480357ENST00000482031ENST00000497951
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Ovary
ENST00000254663 N/A N/A N/A N/A 2.984±0.00 5.455±2.23 5.719±0.00 8.158±1.76
ENST00000409736 0.824±0.00 1.640±0.00 N/A 1.031±0.00 N/A N/A N/A N/A
ENST00000446202 N/A N/A N/A N/A N/A N/A 5.287±0.00 N/A
ENST00000450965 N/A N/A N/A N/A N/A N/A 7.024±0.00 13.628±0.00
ENST00000480357 N/A N/A N/A N/A N/A N/A N/A 0.950±0.00
ENST00000482031 N/A N/A 2.596±0.00 N/A N/A N/A N/A N/A
ENST00000497951 0.455±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D3 CIL_0008D3_0001 VISTA 2:237594726-238198955
CIL_0003NI CIL_0003NI_0001 CGP 2:237967014-238099413
CIL_0004L3 CIL_0004L3_0002 CGP 2:238060889-238133287

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001887 IEA selenium compound metabolic process
GO:0003824 IEA catalytic activity
GO:0005829 TAS cytosol
GO:0006520 TAS cellular amino acid metabolic process
GO:0006629 IEA lipid metabolic process
GO:0008152 IEA metabolic process
GO:0009000 IEA selenocysteine lyase activity
GO:0016740 IEA transferase activity
GO:0016829 IEA lyase activity
GO:0030170 IEA pyridoxal phosphate binding
GO:0032868 IEA response to insulin
GO:1900408 IEA negative regulation of cellular response to oxidative stress

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000073813 scly selenocysteine lyase protein_coding Danio_rerio
ENSMUSG00000026307 Scly selenocysteine lyase protein_coding Mus_musculus

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