C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: selenocysteine lyase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000254663 SCLY-001 ENSG00000132330 9606 + 2:238060889-238099413 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyLiverOvaryENST00000254663
Transcript ID Heart Kidney Liver Ovary
ENST00000254663 2.984±0.00 5.455±2.23 5.719±0.00 8.158±1.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D3 CIL_0008D3_0001 VISTA 2:237594726-238198955
CIL_0003NI CIL_0003NI_0001 CGP 2:237967014-238099413
CIL_0004L3 CIL_0004L3_0002 CGP 2:238060889-238133287

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001887 IEA selenium compound metabolic process
GO:0005829 TAS cytosol
GO:0006520 TAS cellular amino acid metabolic process
GO:0006629 IEA lipid metabolic process
GO:0008152 IEA metabolic process
GO:0009000 IEA selenocysteine lyase activity
GO:0016740 IEA transferase activity
GO:0030170 IEA pyridoxal phosphate binding
GO:0032868 IEA response to insulin
GO:1900408 IEA negative regulation of cellular response to oxidative stress

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027532 Scly-001 protein_coding Mus_musculus 0 1059
ENSMUST00000153621 Scly-002 retained_intron Mus_musculus 0 676
ENSMUST00000154045 Scly-006 nonsense_mediated_decay Mus_musculus 0 597
ENSMUST00000147523 Scly-008 protein_coding Mus_musculus 0 582
ENSMUST00000142488 Scly-005 protein_coding Mus_musculus 0 514
ENSMUST00000137074 Scly-010 protein_coding Mus_musculus 0 449
ENSMUST00000124832 Scly-007 protein_coding Mus_musculus 0 412
ENSMUST00000142802 Scly-003 processed_transcript Mus_musculus 0 309

Loading