C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: selenocysteine lyase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026307 Scly 10090 + 1:91298338-91321075 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027532 Scly-001 91298338-91321075 protein_coding
  ENSMUST00000123651 Scly-004 91298360-91303511 retained_intron
  ENSMUST00000124832 Scly-007 91298404-91308709 protein_coding
  ENSMUST00000137074 Scly-010 91302797-91309872 protein_coding
  ENSMUST00000142488 Scly-005 91298368-91308743 protein_coding
  ENSMUST00000142802 Scly-003 91298427-91305436 processed_transcript
  ENSMUST00000145843 Scly-009 91299932-91302869 protein_coding
  ENSMUST00000147523 Scly-008 91298407-91308815 protein_coding
  ENSMUST00000153621 Scly-002 91298370-91311330 retained_intron
  ENSMUST00000154045 Scly-006 91298369-91309851 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027532ENSMUST00000153621
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027532 6.355±1.06 4.124±2.48 9.975±0.16 4.215±0.75 5.529±2.38 3.945±1.42 4.182±0.44 41.199±6.18 27.281±11.71 8.652±2.84 3.337±0.83 2.837±1.22 13.713±5.73 7.603±3.08
ENSMUST00000153621 0.975±0.00 N/A N/A 0.492±0.00 1.529±0.05 N/A 0.604±0.00 N/A N/A 1.564±0.00 0.434±0.00 1.057±0.23 1.596±0.42 1.312±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D3 CIL_0008D3_0002 VISTA 1:90908179-91512308
CIL_0003NI CIL_0003NI_0002 CGP 1:91250304-91321075
CIL_0004L3 CIL_0004L3_0003 CGP 1:91298338-91348306

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001887 IMP selenium compound metabolic process
GO:0003824 IEA catalytic activity
GO:0005737 IEA cytoplasm
GO:0006629 IMP lipid metabolic process
GO:0009000 IEA selenocysteine lyase activity
GO:0016740 IEA transferase activity
GO:0030170 IEA pyridoxal phosphate binding
GO:0032868 IMP response to insulin
GO:1900408 IMP negative regulation of cellular response to oxidative stress

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000073813 scly selenocysteine lyase protein_coding Danio_rerio
ENSG00000132330 SCLY selenocysteine lyase protein_coding Homo_sapiens

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