| Transcript ID | Bladder | Brain | Colon |
|---|---|---|---|
| ENST00000409736 | 0.824±0.00 | 1.640±0.00 | 1.031±0.00 |
C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | selenocysteine lyase | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000409736  |
SCLY-003 |
ENSG00000132330 |
9606 | + |
2:238061031-238092083  |
protein_coding |
Expression Patterns
|
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0008D3 | CIL_0008D3_0001 | VISTA | 2:237594726-238198955 |
| CIL_0003NI | CIL_0003NI_0001 | CGP | 2:237967014-238099413 |
| CIL_0004L3 | CIL_0004L3_0002 | CGP | 2:238060889-238133287 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005829 | TAS | cytosol |
| GO:0006520 | TAS:IEA | cellular amino acid metabolic process |
| GO:0008152 | IEA | metabolic process |
| GO:0009000 | IEA | selenocysteine lyase activity |
| GO:0016740 | IEA | transferase activity |
| GO:0016829 | IEA | lyase activity |
| GO:0030170 | IEA | pyridoxal phosphate binding |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000027532
|
Scly-001 | protein_coding | Mus_musculus | 0 | 730 |
|
ENSMUST00000153621
|
Scly-002 | retained_intron | Mus_musculus | 0 | 676 |
|
ENSMUST00000154045
|
Scly-006 | nonsense_mediated_decay | Mus_musculus | 0 | 597 |
|
ENSMUST00000147523
|
Scly-008 | protein_coding | Mus_musculus | 0 | 582 |
|
ENSMUST00000142488
|
Scly-005 | protein_coding | Mus_musculus | 0 | 514 |
|
ENSMUST00000137074
|
Scly-010 | protein_coding | Mus_musculus | 0 | 449 |
|
ENSMUST00000124832
|
Scly-007 | protein_coding | Mus_musculus | 0 | 412 |
|
ENSMUST00000142802
|
Scly-003 | processed_transcript | Mus_musculus | 0 | 309 |
