C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 13 homolog B (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000132549 VPS13B 9606 + 8:99013266-99877580 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000355155 VPS13B-004 99013266-99209787 protein_coding
  ENST00000357162 VPS13B-001 99013266-99877580 protein_coding
  ENST00000358544 VPS13B-002 99013266-99877580 protein_coding
  ENST00000441350 VPS13B-006 99013274-99121762 protein_coding
  ENST00000493587 VPS13B-005 99868057-99877580 retained_intron
  ENST00000496144 VPS13B-003 99013266-99577785 nonsense_mediated_decay
  ENST00000518569 VPS13B-012 99720868-99778835 processed_transcript
  ENST00000521037 VPS13B-010 99389616-99442411 processed_transcript
  ENST00000521559 VPS13B-009 99520899-99641893 protein_coding
  ENST00000521932 VPS13B-007 99156629-99241502 processed_transcript
  ENST00000522802 VPS13B-011 99275209-99424532 processed_transcript
  ENST00000524330 VPS13B-013 99103059-99121332 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000357162ENST00000358544ENST00000493587ENST00000496144
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000357162 1.016±0.00 1.131±0.00 N/A 1.047±0.32 0.935±0.42 0.877±0.02 1.686±0.64 2.690±2.34 1.703±1.05 0.405±0.00 0.737±0.23 0.531±0.21 1.613±0.45
ENST00000358544 0.309±0.00 N/A 1.366±0.00 N/A 0.437±0.00 0.276±0.00 N/A N/A 0.850±0.00 0.400±0.00 1.050±0.50 N/A 0.945±0.00
ENST00000493587 1.029±0.00 2.430±0.00 N/A 1.459±0.00 1.835±0.00 N/A 2.539±0.00 0.832±0.00 1.306±0.00 N/A 2.035±0.77 1.151±0.27 2.740±0.00
ENST00000496144 N/A N/A N/A N/A N/A 1.591±0.00 N/A 3.836±0.00 2.500±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00026G CIL_00026G_0001 CGP 8:98944403-99877580
CIL_00090P CIL_00090P_0001 VISTA 8:98972229-99575594
CIL_0006JN CIL_0006JN_0001 CGP 8:99013266-99894062

Gene Ontology
GO IDEvidence TypeGO Description
GO:0015031 IEA protein transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000086406 vacuolar protein sorting 13 homolog B (yeast) protein_coding Danio_rerio
ENSDARG00000086745 VPS13B (1 of 4) vacuolar protein sorting 13 homolog B (yeast) protein_coding Danio_rerio
ENSDARG00000087039 VPS13B (2 of 4) vacuolar protein sorting 13 homolog B (yeast) protein_coding Danio_rerio
ENSDARG00000090225 CABZ01111454.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000091054 VPS13B (4 of 4) vacuolar protein sorting 13 homolog B (yeast) protein_coding Danio_rerio
ENSMUSG00000037646 Vps13b vacuolar protein sorting 13B (yeast) protein_coding Mus_musculus

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