C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006JN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000132549-ENSG00000164919 CGP 9606 8:99013266-99894062
GeneTranscriptPositionBiotype
ENSG00000164919 (COX6C)
cytochrome c oxidase subunit VIc 		ENST00000297564 (COX6C-003) 99878148-99893684 protein_coding
ENST00000517682 (COX6C-005) 99878149-99893681 protein_coding
ENST00000518171 (COX6C-002) 99885992-99893697 protein_coding
ENST00000520271 (COX6C-007) 99878149-99893622 protein_coding
ENST00000520468 (COX6C-001) 99877866-99894062 protein_coding
ENST00000520517 (COX6C-009) 99874996-99893707 nonsense_mediated_decay
ENST00000522934 (COX6C-010) 99873200-99893706 nonsense_mediated_decay
ENST00000522940 (COX6C-006) 99878151-99893623 protein_coding
ENST00000523016 (COX6C-004) 99887061-99893680 protein_coding
ENST00000524245 (COX6C-008) 99878150-99893135 protein_coding
ENST00000606245 (COX6C-011) 99878149-99878794 retained_intron
ENSG00000225017 (AP004289.1)
 ENST00000436307 (AP004289.1-001) 99346052-99348256 processed_pseudogene
ENSG00000235683 (AC018442.1)
 ENST00000421439 (AC018442.1-001) 99695957-99698017 processed_pseudogene
ENSG00000236583 (AP004290.1)
 ENST00000440915 (AP004290.1-001) 99233048-99234459 processed_pseudogene
ENSG00000237704 (AP004289.2)
 ENST00000444413 (AP004289.2-001) 99340305-99341761 processed_pseudogene
ENSG00000243254 (RN7SL350P)
RNA, 7SL, cytoplasmic 350, pseudogene 		ENST00000492591 (RN7SL350P-201) 99613783-99614081 misc_RNA
ENSG00000253532 (CTD-2340D6.1)
 ENST00000523226 (CTD-2340D6.1-001) 99119352-99120581 sense_intronic
ENSG00000253539 (RP11-402L5.1)
 ENST00000523658 (RP11-402L5.1-001) 99796615-99799187 antisense
ENSG00000253562 (CTD-2340D6.2)
 ENST00000520844 (CTD-2340D6.2-001) 99091738-99094060 antisense
ENSG00000253912 (RP11-402L5.2)
 ENST00000523025 (RP11-402L5.2-001) 99804159-99804341 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0006JN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037646-ENSMUSG00000014313 CGP 10090 15:35371546-35938246
GeneTranscriptPositionBiotype
ENSMUSG00000014313 (Cox6c)
cytochrome c oxidase subunit VIc 		ENSMUST00000014457 (Cox6c-001) 35931976-35938246 protein_coding
ENSMUST00000127999 (Cox6c-002) 35931983-35938207 retained_intron
ENSMUST00000153512 (Cox6c-004) 35931980-35937645 protein_coding
ENSMUST00000155638 (Cox6c-005) 35925886-35935331 nonsense_mediated_decay
ENSMUST00000156915 (Cox6c-003) 35935387-35938009 protein_coding
ENSMUSG00000037646 (Vps13b)
vacuolar protein sorting 13B (yeast) 		ENSMUST00000048646 (Vps13b-201) 35371546-35931228 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006JN_0001ENSG00000164919ENST00000297564ENST00000517682ENST00000518171ENST00000520271ENST00000520468ENST00000520517ENST00000522934ENST00000522940ENST00000523016ENST00000524245ENST00000606245ENSG00000225017ENST00000436307ENSG00000235683ENST00000421439ENSG00000236583ENST00000440915ENSG00000237704ENST00000444413ENSG00000243254ENST00000492591ENSG00000253532ENST00000523226ENSG00000253539ENST00000523658ENSG00000253562ENST00000520844ENSG00000253912ENST00000523025CIL_0006JN_0002ENSMUSG00000014313ENSMUST00000014457ENSMUST00000127999ENSMUST00000153512ENSMUST00000155638ENSMUST00000156915ENSMUSG00000037646ENSMUST00000048646
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006JN_0001ENSG00000164919ENST00000297564ENST00000517682ENST00000518171ENST00000520271ENST00000520517ENST00000522934ENSG00000225017ENST00000436307ENSG00000235683ENST00000421439ENSG00000236583ENST00000440915ENSG00000237704ENST00000444413ENSG00000243254ENST00000492591ENSG00000253532ENST00000523226ENSG00000253539ENST00000523658ENSG00000253562ENST00000520844ENSG00000253912ENST00000523025CIL_0006JN_0002ENSMUSG00000014313ENSMUST00000014457ENSMUSG00000037646ENSMUST00000048646
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000164919 ENST00000297564 N/A N/A N/A N/A N/A N/A 163.040±0.00 N/A 24.121±0.00 44.945±0.00 46.967±0.00 N/A N/A N/A
ENST00000517682 29.336±0.00 55.493±0.00 29.183±0.00 193.626±36.26 60.370±11.41 152.409±52.28 153.811±60.63 133.157±23.37 78.454±23.11 53.482±30.51 157.465±124.84 147.813±89.09 123.296±16.91 68.323±29.57
ENST00000518171 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 176.703±0.00 95.168±0.00 85.282±0.00
ENST00000520271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 65.820±0.00 N/A N/A
ENST00000520468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520517 21.416±0.00 N/A 15.497±0.00 57.090±0.00 22.059±0.00 N/A N/A N/A N/A 48.509±0.00 N/A 33.985±0.00 N/A 17.963±0.00
ENST00000522934 N/A 46.758±0.00 N/A 235.993±0.00 41.986±0.00 52.697±0.00 72.214±32.25 55.841±0.00 31.213±17.80 N/A 50.259±40.54 76.657±6.12 16.402±0.00 36.904±0.00
ENST00000522940 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523016 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524245 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000606245 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000225017 ENST00000436307 0.006±0.00 N/A 0.199±0.00 0.033±0.01 0.176±0.15 0.133±0.00 0.084±0.06 0.037±0.00 0.037±0.00 N/A 0.051±0.00 0.082±0.06 N/A N/A
ENSG00000235683 ENST00000421439 0.064±0.00 0.021±0.00 N/A 0.118±0.00 0.413±0.00 0.057±0.05 0.091±0.04 0.328±0.00 0.565±0.00 0.342±0.26 0.089±0.00 0.166±0.16 0.025±0.00 0.169±0.15
ENSG00000236583 ENST00000440915 0.021±0.00 0.103±0.00 0.109±0.00 N/A 0.122±0.06 0.263±0.25 0.030±0.01 N/A 0.078±0.00 0.253±0.00 N/A 0.111±0.12 N/A N/A
ENSG00000237704 ENST00000444413 0.042±0.00 N/A 0.025±0.00 0.122±0.00 0.104±0.00 0.230±0.00 0.055±0.00 N/A 0.112±0.00 0.120±0.00 N/A 0.060±0.00 N/A 0.024±0.00
ENSG00000243254 ENST00000492591 N/A N/A N/A N/A 0.471±0.00 N/A N/A N/A N/A 0.640±0.00 N/A N/A N/A N/A
ENSG00000253532 ENST00000523226 0.123±0.00 0.169±0.00 0.179±0.00 0.161±0.00 0.567±0.46 0.358±0.29 0.091±0.00 N/A 0.181±0.00 0.151±0.03 0.017±0.00 0.299±0.00 N/A 0.054±0.00
ENSG00000253539 ENST00000523658 N/A 0.086±0.00 1.329±0.00 N/A 0.387±0.00 0.526±0.00 0.540±0.00 N/A 1.324±1.29 N/A N/A 0.607±0.33 0.133±0.00 0.039±0.00
ENSG00000253562 ENST00000520844 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.581±0.00 N/A 0.086±0.06 N/A 0.134±0.00
ENSG00000253912 ENST00000523025 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.150±0.00 0.362±0.00 0.380±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000014313 ENSMUST00000014457 227.119±24.48 223.386±15.93 827.626±36.19 264.436±79.53 200.455±92.71 401.439±86.96 1407.642±314.46 1081.686±284.50 447.465±111.97 198.097±12.56 794.589±62.32 241.189±159.56 285.812±77.07 318.853±82.35
ENSMUST00000127999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153512 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155638 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000037646 ENSMUST00000048646 5.963±2.26 4.532±0.63 3.726±0.00 2.690±0.26 3.435±0.22 5.015±1.29 N/A 4.585±0.35 2.906±0.32 4.305±0.80 N/A 4.210±1.30 2.605±0.85 4.090±1.12

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