C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nucleoporin like 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000136243 NUPL2 9606 + 7:23181827-23201011 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000258742 NUPL2-001 23181827-23201009 protein_coding
  ENST00000410002 NUPL2-008 23182038-23188219 protein_coding
  ENST00000413919 NUPL2-002 23182064-23200705 protein_coding
  ENST00000437140 NUPL2-005 23182066-23200967 nonsense_mediated_decay
  ENST00000438012 NUPL2-003 23182024-23201006 nonsense_mediated_decay
  ENST00000477844 NUPL2-006 23194403-23201011 retained_intron
  ENST00000485250 NUPL2-004 23181841-23200955 retained_intron
  ENST00000486136 NUPL2-010 23187073-23197284 retained_intron
  ENST00000487595 NUPL2-009 23182049-23196442 processed_transcript
  ENST00000489145 NUPL2-011 23199424-23200824 retained_intron
  ENST00000497500 NUPL2-007 23182038-23187392 retained_intron
  ENST00000548367 NUPL2-201 23194924-23198399 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000258742ENST00000410002ENST00000413919ENST00000437140ENST00000438012ENST00000477844ENST00000485250ENST00000487595ENST00000489145ENST00000497500
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000258742 1.662±0.00 N/A 0.279±0.00 1.301±0.00 2.099±0.16 2.742±0.00 1.755±1.15 1.855±0.00 2.199±0.00 0.722±0.24 0.849±0.00 3.056±1.60 1.584±0.19 4.643±1.35
ENST00000410002 N/A N/A 0.672±0.00 N/A N/A N/A N/A N/A 2.033±0.00 N/A 1.412±0.00 N/A 1.276±0.00 N/A
ENST00000413919 N/A 2.658±0.00 N/A 2.233±0.00 1.642±0.00 N/A N/A N/A N/A 0.999±0.00 N/A 1.393±0.00 N/A 3.382±0.21
ENST00000437140 N/A N/A N/A N/A N/A N/A N/A 2.452±0.00 N/A 0.749±0.00 N/A 2.658±1.04 0.886±0.11 N/A
ENST00000438012 N/A N/A N/A N/A N/A N/A N/A 1.320±0.00 1.356±0.00 N/A 0.458±0.00 N/A N/A N/A
ENST00000477844 0.319±0.00 N/A N/A 0.589±0.00 0.720±0.10 0.641±0.04 0.613±0.00 0.847±0.02 1.024±0.00 1.411±0.00 0.190±0.00 0.681±0.12 0.266±0.00 N/A
ENST00000485250 N/A N/A N/A 0.868±0.00 N/A N/A N/A N/A N/A N/A N/A 0.660±0.00 0.421±0.00 N/A
ENST00000487595 1.666±0.00 N/A N/A 4.052±0.00 N/A 4.567±0.00 1.104±0.00 N/A 2.276±0.00 2.930±0.00 0.715±0.00 5.473±0.00 N/A 11.153±0.00
ENST00000489145 N/A N/A 0.788±0.00 2.839±0.00 N/A N/A 2.438±0.00 2.676±0.00 2.271±0.00 1.802±0.00 1.785±0.21 3.835±0.00 1.874±0.00 5.325±0.00
ENST00000497500 1.132±0.00 4.176±0.00 N/A 2.546±0.00 1.981±0.00 N/A 0.726±0.00 1.267±0.00 1.166±0.00 0.855±0.00 N/A 4.315±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00022N CIL_00022N_0001 CGP 7:23105758-23201011

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0005049 TAS nuclear export signal receptor activity
GO:0005634 IDA nucleus
GO:0005643 IEA nuclear pore
GO:0005829 TAS cytosol
GO:0005975 TAS carbohydrate metabolic process
GO:0006611 TAS protein export from nucleus
GO:0007077 TAS mitotic nuclear envelope disassembly
GO:0008645 TAS hexose transport
GO:0010827 TAS regulation of glucose transport
GO:0015758 TAS glucose transport
GO:0016032 TAS viral process
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0044281 TAS small molecule metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0051028 IEA mRNA transport
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029043 nupl2 nucleoporin like 2 protein_coding Danio_rerio
ENSMUSG00000048439 Nupl2 nucleoporin like 2 protein_coding Mus_musculus

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