C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000258742 NUPL2-001 ENSG00000136243 9606 + 7:23181827-23201009 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000258742
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000258742 1.662±0.00 0.279±0.00 1.301±0.00 2.099±0.16 2.742±0.00 1.755±1.15 1.855±0.00 2.199±0.00 0.722±0.24 0.849±0.00 3.056±1.60 1.584±0.19 4.643±1.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00022N CIL_00022N_0001 CGP 7:23105758-23201011

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0005049 TAS nuclear export signal receptor activity
GO:0005634 IDA nucleus
GO:0005643 IEA nuclear pore
GO:0005829 TAS cytosol
GO:0005975 TAS carbohydrate metabolic process
GO:0006611 TAS protein export from nucleus
GO:0007077 TAS mitotic nuclear envelope disassembly
GO:0008645 TAS hexose transport
GO:0010827 TAS regulation of glucose transport
GO:0015758 TAS glucose transport
GO:0016032 TAS viral process
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0044281 TAS small molecule metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0051028 IEA mRNA transport
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049887 Nupl2-001 protein_coding Mus_musculus 0 918
ENSMUST00000115101 Nupl2-002 nonsense_mediated_decay Mus_musculus 0 357
ENSMUST00000147392 Nupl2-003 retained_intron Mus_musculus 8.99998e-41 172

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