C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 20
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000136878 USP20 9606 + 9:129834698-129881838 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000315480 USP20-003 129835470-129881828 protein_coding
  ENST00000358355 USP20-002 129835478-129881828 protein_coding
  ENST00000372429 USP20-001 129835446-129881838 protein_coding
  ENST00000472108 USP20-007 129879373-129881828 processed_transcript
  ENST00000474895 USP20-006 129868322-129878437 processed_transcript
  ENST00000491053 USP20-004 129834698-129852636 processed_transcript
  ENST00000491731 USP20-008 129868367-129870152 processed_transcript
  ENST00000494971 USP20-005 129835417-129858547 processed_transcript
  ENST00000496927 USP20-009 129875597-129880518 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000315480ENST00000358355ENST00000372429ENST00000472108
Transcript ID Adipose Adrenal Bladder Brain Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000315480 N/A N/A N/A 7.438±0.00 N/A N/A N/A N/A N/A 4.861±0.08 N/A N/A
ENST00000358355 N/A N/A 0.467±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000372429 4.487±0.00 N/A N/A 1.441±0.00 0.815±0.00 0.528±0.00 1.482±0.00 8.134±0.00 5.587±0.00 6.191±0.00 4.804±1.29 7.943±0.00
ENST00000472108 N/A 20.567±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005UA CIL_0005UA_0001 CGP 9:129812944-129835863
CIL_0002M0 CIL_0002M0_0002 CGP 9:129827290-129881838
CIL_0006FN CIL_0006FN_0001 CGP 9:129834698-130043194

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001664 IPI G-protein coupled receptor binding
GO:0004197 IMP cysteine-type endopeptidase activity
GO:0004221 IDA ubiquitin thiolesterase activity
GO:0004843 IEA ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005813 IDA centrosome
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0006897 IEA endocytosis
GO:0008270 IEA zinc ion binding
GO:0008277 IMP regulation of G-protein coupled receptor protein signaling pathway
GO:0016579 IDA protein deubiquitination
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0070536 IDA protein K63-linked deubiquitination
GO:0071108 IDA protein K48-linked deubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000027501 usp20 ubiquitin specific protease 20 protein_coding Danio_rerio
ENSMUSG00000026854 Usp20 ubiquitin specific peptidase 20 protein_coding Mus_musculus

Loading