C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 20
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026854 Usp20 10090 + 2:30982279-31023586 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000061544 Usp20-002 30982363-31007592 protein_coding
  ENSMUST00000102849 Usp20-001 30982279-31023586 protein_coding
  ENSMUST00000125601 Usp20-005 30995655-31002618 protein_coding
  ENSMUST00000127776 Usp20-008 31019819-31021381 retained_intron
  ENSMUST00000128295 Usp20-006 30995756-31002949 protein_coding
  ENSMUST00000136588 Usp20-010 30998840-31006422 protein_coding
  ENSMUST00000138161 Usp20-003 30982397-31002949 protein_coding
  ENSMUST00000142232 Usp20-004 30982429-31000078 protein_coding
  ENSMUST00000154351 Usp20-009 30996048-31006393 processed_transcript
  ENSMUST00000154634 Usp20-007 31002561-31003726 retained_intron
  ENSMUST00000170476 Usp20-201 30996042-31023582 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102849ENSMUST00000170476
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102849 3.567±1.40 5.513±2.03 3.653±0.22 8.298±4.18 4.447±1.86 3.627±1.54 2.575±0.54 2.827±0.77 1.553±0.49 3.690±0.76 1.889±0.77 8.677±2.50 0.935±0.00 7.137±2.71
ENSMUST00000170476 N/A 3.843±1.61 0.688±0.00 5.705±5.67 2.541±1.26 2.447±0.95 5.827±1.62 7.616±1.42 0.882±0.23 1.888±0.63 0.909±0.25 4.968±0.79 4.833±1.34 4.739±2.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002M0 CIL_0002M0_0003 CGP 2:30972833-31023586
CIL_0006FN CIL_0006FN_0002 CGP 2:30982279-31142008

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001664 IEA G-protein coupled receptor binding
GO:0004197 ISS cysteine-type endopeptidase activity
GO:0004221 ISS ubiquitin thiolesterase activity
GO:0004843 IEA ubiquitin-specific protease activity
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005813 ISS centrosome
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0006897 IEA endocytosis
GO:0008270 IEA zinc ion binding
GO:0008277 ISS regulation of G-protein coupled receptor protein signaling pathway
GO:0016579 ISS protein deubiquitination
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0070536 ISS protein K63-linked deubiquitination
GO:0071108 ISS protein K48-linked deubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000027501 usp20 ubiquitin specific protease 20 protein_coding Danio_rerio
ENSG00000136878 USP20 ubiquitin specific peptidase 20 protein_coding Homo_sapiens

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