C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372429 USP20-001 ENSG00000136878 9606 + 9:129835446-129881838 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372429
Transcript ID Adipose Brain Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372429 4.487±0.00 1.441±0.00 0.815±0.00 0.528±0.00 1.482±0.00 8.134±0.00 5.587±0.00 6.191±0.00 4.804±1.29 7.943±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005UA CIL_0005UA_0001 CGP 9:129812944-129835863
CIL_0002M0 CIL_0002M0_0002 CGP 9:129827290-129881838
CIL_0006FN CIL_0006FN_0001 CGP 9:129834698-130043194

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001664 IPI G-protein coupled receptor binding
GO:0004197 IMP cysteine-type endopeptidase activity
GO:0004221 IDA ubiquitin thiolesterase activity
GO:0004843 IEA ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005813 IDA centrosome
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0006897 IEA endocytosis
GO:0008270 IEA zinc ion binding
GO:0008277 IMP regulation of G-protein coupled receptor protein signaling pathway
GO:0016579 IDA protein deubiquitination
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0070536 IDA protein K63-linked deubiquitination
GO:0071108 IDA protein K48-linked deubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170476 Usp20-201 protein_coding Mus_musculus 0 3160
ENSMUST00000102849 Usp20-001 protein_coding Mus_musculus 0 3160
ENSMUST00000061544 Usp20-002 protein_coding Mus_musculus 0 676
ENSMUST00000154351 Usp20-009 processed_transcript Mus_musculus 0 451
ENSMUST00000136588 Usp20-010 protein_coding Mus_musculus 0 429

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