C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380394 RPS6-001 ENSG00000137154 9606 - 9:19375715-19380254 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000380394
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000380394 98.090±0.00 161.409±0.00 10.162±0.00 16.792±0.00 52.412±12.77 114.795±0.00 10.490±0.00 20.944±0.00 38.119±0.00 36.756±0.00 31.856±0.00 233.986±178.35 80.297±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007DD CIL_0007DD_0001 CGP 9:19230435-19380254
CIL_0007DC CIL_0007DC_0001 CGP 9:19375715-19452020

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000028 IEA ribosomal small subunit assembly
GO:0000082 IEA G1/S transition of mitotic cell cycle
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0001890 IEA placenta development
GO:0002309 IEA T cell proliferation involved in immune response
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005844 IEA polysome
GO:0006364 IMP rRNA processing
GO:0006412 IEA:IC translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0006924 IEA activation-induced cell death of T cells
GO:0007067 IEA mitotic nuclear division
GO:0007093 IEA mitotic cell cycle checkpoint
GO:0007369 IEA gastrulation
GO:0008286 TAS insulin receptor signaling pathway
GO:0010467 TAS gene expression
GO:0015935 IDA small ribosomal subunit
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0019901 IPI protein kinase binding
GO:0022605 IEA oogenesis stage
GO:0022627 NAS cytosolic small ribosomal subunit
GO:0030425 IDA dendrite
GO:0030529 IDA ribonucleoprotein complex
GO:0031929 IDA TOR signaling
GO:0033077 IEA T cell differentiation in thymus
GO:0036464 IDA cytoplasmic ribonucleoprotein granule
GO:0042274 IMP ribosomal small subunit biogenesis
GO:0042593 ISS glucose homeostasis
GO:0043065 IDA positive regulation of apoptotic process
GO:0043066 IEA negative regulation of apoptotic process
GO:0044267 TAS cellular protein metabolic process
GO:0044297 IDA cell body
GO:0044822 IDA poly(A) RNA binding
GO:0048471 IEA perinuclear region of cytoplasm
GO:0048821 IEA erythrocyte development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102814 Rps6-001 protein_coding Mus_musculus 0 944
ENSMUST00000118499 Rps6-ps4-001 processed_pseudogene Mus_musculus 0 878
ENSMUST00000120762 Gm8172-001 processed_pseudogene Mus_musculus 0 867
ENSMUST00000100510 Gm16409-201 processed_pseudogene Mus_musculus 0 861
ENSMUST00000074205 Rps6-ps1-201 processed_pseudogene Mus_musculus 0 856
ENSMUST00000121853 Gm11263-001 processed_pseudogene Mus_musculus 0 848
ENSMUST00000118010 Rps6-ps3-001 processed_pseudogene Mus_musculus 0 839
ENSMUST00000122061 Gm14138-001 processed_pseudogene Mus_musculus 0 800
ENSMUST00000079841 Rps6-ps2-201 processed_pseudogene Mus_musculus 0 789
ENSMUST00000121487 Gm11604-001 processed_pseudogene Mus_musculus 0 765
ENSMUST00000136174 Rps6-002 processed_transcript Mus_musculus 0 758
ENSMUST00000118824 Gm12242-001 processed_pseudogene Mus_musculus 0 745
ENSMUST00000118220 Gm8145-001 processed_pseudogene Mus_musculus 0 704
ENSMUST00000123229 Rps6-004 processed_transcript Mus_musculus 0 593
ENSMUST00000130001 Rps6-003 processed_transcript Mus_musculus 0 398
ENSMUST00000118255 Gm14172-001 processed_pseudogene Mus_musculus 0 278
ENSMUST00000118747 Gm15233-001 processed_pseudogene Mus_musculus 8.40779e-45 185
ENSMUST00000165520 Gm9006-001 processed_pseudogene Mus_musculus 4e-28 130
ENSMUST00000183833 Gm27225-001 processed_pseudogene Mus_musculus 0.00000000000003 84
ENSMUST00000117178 Gm14481-001 processed_pseudogene Mus_musculus 0.000000000005 77
ENSMUST00000120745 Gm9143-001 processed_pseudogene Mus_musculus 0 800

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