C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000315377 RPS6-003 ENSG00000137154 9606 - 9:19376285-19380198 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000315377
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000315377 868.903±0.00 1410.870±0.00 113.081±0.00 265.103±154.64 549.248±175.65 1076.847±599.39 204.096±139.27 530.906±327.16 425.641±58.27 887.213±701.28 302.244±180.31 1379.625±775.84 848.281±130.39 663.163±292.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007DD CIL_0007DD_0001 CGP 9:19230435-19380254
CIL_0007DC CIL_0007DC_0001 CGP 9:19375715-19452020

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005737 IDA cytoplasm
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118499 Rps6-ps4-001 processed_pseudogene Mus_musculus 0 870
ENSMUST00000102814 Rps6-001 protein_coding Mus_musculus 0 870
ENSMUST00000120762 Gm8172-001 processed_pseudogene Mus_musculus 0 859
ENSMUST00000100510 Gm16409-201 processed_pseudogene Mus_musculus 0 854
ENSMUST00000074205 Rps6-ps1-201 processed_pseudogene Mus_musculus 0 848
ENSMUST00000121853 Gm11263-001 processed_pseudogene Mus_musculus 0 841
ENSMUST00000118010 Rps6-ps3-001 processed_pseudogene Mus_musculus 0 832
ENSMUST00000122061 Gm14138-001 processed_pseudogene Mus_musculus 0 793
ENSMUST00000079841 Rps6-ps2-201 processed_pseudogene Mus_musculus 0 782
ENSMUST00000121487 Gm11604-001 processed_pseudogene Mus_musculus 0 761
ENSMUST00000136174 Rps6-002 processed_transcript Mus_musculus 0 760
ENSMUST00000118824 Gm12242-001 processed_pseudogene Mus_musculus 0 737
ENSMUST00000118220 Gm8145-001 processed_pseudogene Mus_musculus 0 697
ENSMUST00000123229 Rps6-004 processed_transcript Mus_musculus 0 568
ENSMUST00000118255 Gm14172-001 processed_pseudogene Mus_musculus 0 278
ENSMUST00000130001 Rps6-003 processed_transcript Mus_musculus 0 196
ENSMUST00000118747 Gm15233-001 processed_pseudogene Mus_musculus 5.60519e-45 185
ENSMUST00000165520 Gm9006-001 processed_pseudogene Mus_musculus 2e-28 130
ENSMUST00000183833 Gm27225-001 processed_pseudogene Mus_musculus 0.00000000000002 84
ENSMUST00000117178 Gm14481-001 processed_pseudogene Mus_musculus 0.000000000003 77
ENSMUST00000120745 Gm9143-001 processed_pseudogene Mus_musculus 0 793

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