C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: bromodomain, testis-specific
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000137948 BRDT 9606 + 1:91949371-92014426 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000355011 BRDT-008 91949401-91962796 protein_coding
  ENST00000362005 BRDT-001 91949371-92014421 protein_coding
  ENST00000370389 BRDT-002 91949371-92014421 protein_coding
  ENST00000394530 BRDT-201 91949371-92014426 protein_coding
  ENST00000399546 BRDT-202 91949371-92014426 protein_coding
  ENST00000402388 BRDT-006 91952162-92014421 protein_coding
  ENST00000423434 BRDT-004 91949372-91976350 protein_coding
  ENST00000426141 BRDT-005 91949401-91980743 protein_coding
  ENST00000427104 BRDT-012 91949398-91976286 protein_coding
  ENST00000440509 BRDT-003 91949384-91976421 protein_coding
  ENST00000448194 BRDT-013 91949401-91976286 protein_coding
  ENST00000449584 BRDT-007 91949398-91962910 protein_coding
  ENST00000450792 BRDT-016 91949403-91964722 protein_coding
  ENST00000457265 BRDT-017 91949434-91962849 protein_coding
  ENST00000461218 BRDT-011 91949398-91950299 processed_transcript
  ENST00000470955 BRDT-009 91949398-91950302 processed_transcript
  ENST00000476711 BRDT-010 91949398-91950332 processed_transcript
  ENST00000484781 BRDT-018 91977081-91979603 processed_transcript
  ENST00000484833 BRDT-015 91949403-91950312 processed_transcript
  ENST00000548992 BRDT-019 91949403-91964735 protein_coding
  ENST00000552654 BRDT-020 91949403-91968224 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355011ENST00000370389ENST00000394530ENST00000402388ENST00000426141ENST00000449584ENST00000450792ENST00000457265ENST00000484781ENST00000552654
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355011 N/A 0.159±0.00 0.234±0.00 0.125±0.00 0.152±0.00 0.117±0.00 0.294±0.00 0.037±0.00 N/A 0.036±0.00 0.043±0.00 N/A N/A
ENST00000370389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.347±0.00
ENST00000394530 N/A 0.020±0.00 0.048±0.00 0.003±0.00 N/A N/A N/A N/A N/A N/A N/A 0.024±0.00 21.722±0.00
ENST00000402388 0.025±0.00 N/A N/A 0.005±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 19.201±0.00
ENST00000426141 N/A N/A N/A N/A 0.012±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449584 N/A N/A N/A N/A N/A N/A N/A N/A 0.139±0.00 N/A 0.067±0.00 N/A N/A
ENST00000450792 N/A N/A N/A N/A N/A N/A N/A N/A 0.016±0.00 N/A N/A N/A N/A
ENST00000457265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.089±0.02 N/A N/A
ENST00000484781 0.033±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552654 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.077±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DI CIL_0008DI_0001 VISTA 1:91505983-92108430
CIL_0008YV CIL_0008YV_0001 VISTA 1:91545179-92146674
CIL_0005ZR CIL_0005ZR_0001 CGP 1:91680343-92014426
CIL_0005ZS CIL_0005ZS_0001 CGP 1:91949371-92063536

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001207 ISS histone displacement
GO:0003713 TAS transcription coactivator activity
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0006338 ISS chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0007140 ISS male meiosis
GO:0007141 ISS male meiosis I
GO:0007283 ISS spermatogenesis
GO:0008380 IEA RNA splicing
GO:0030154 IEA cell differentiation
GO:0042393 IDA histone binding
GO:0043484 ISS regulation of RNA splicing
GO:0051039 ISS positive regulation of transcription during meiosis
GO:0070577 ISS lysine-acetylated histone binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020076 brdt bromodomain, testis-specific protein_coding Danio_rerio
ENSMUSG00000029279 Brdt bromodomain, testis-specific protein_coding Mus_musculus

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