C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: bromodomain, testis-specific
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029279 Brdt 10090 + 5:107331159-107387058 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031215 Brdt-001 107331159-107387058 protein_coding
  ENSMUST00000112677 Brdt-003 107331175-107350741 protein_coding
  ENSMUST00000161377 Brdt-004 107331192-107342075 processed_transcript
  ENSMUST00000162804 Brdt-002 107359837-107386361 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031215ENSMUST00000112677ENSMUST00000162804
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031215 0.360±0.15 1.195±0.74 N/A 0.891±0.67 0.476±0.29 0.700±0.25 0.087±0.02 0.173±0.08 0.098±0.09 0.517±0.00 0.159±0.02 1.139±0.77 0.115±0.08 11.727±3.45
ENSMUST00000112677 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.060±0.00 47.356±7.53
ENSMUST00000162804 0.552±0.16 0.854±0.23 0.553±0.04 1.137±0.55 1.045±0.00 0.498±0.00 0.110±0.05 0.247±0.10 0.285±0.24 0.311±0.10 0.444±0.15 0.992±0.66 0.127±0.05 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DI CIL_0008DI_0002 VISTA 5:106921760-107524214
CIL_0008YV CIL_0008YV_0002 VISTA 5:106950899-107552442
CIL_0005ZR CIL_0005ZR_0002 CGP 5:107106570-107387058
CIL_0005ZS CIL_0005ZS_0002 CGP 5:107331159-107430035

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001207 IMP histone displacement
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006338 IDA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0007140 IMP male meiosis
GO:0007141 IMP male meiosis I
GO:0007283 IMP spermatogenesis
GO:0008380 IEA RNA splicing
GO:0030154 IEA cell differentiation
GO:0042393 IDA histone binding
GO:0043484 IMP regulation of RNA splicing
GO:0051039 IMP positive regulation of transcription during meiosis
GO:0070577 IMP lysine-acetylated histone binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020076 brdt bromodomain, testis-specific protein_coding Danio_rerio
ENSG00000137948 BRDT bromodomain, testis-specific protein_coding Homo_sapiens

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