C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005ZR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000069702-ENSG00000137948 CGP 9606 1:91680343-92014426
GeneTranscriptPositionBiotype
ENSG00000069702 (TGFBR3)
transforming growth factor, beta receptor III 		ENST00000212355 (TGFBR3-201) 91680345-91886279 protein_coding
ENST00000370399 (TGFBR3-001) 91682426-91906335 protein_coding
ENST00000417833 (TGFBR3-009) 91797427-91886122 protein_coding
ENST00000465892 (TGFBR3-002) 91683729-91886109 protein_coding
ENST00000468996 (TGFBR3-004) 91727777-91766432 processed_transcript
ENST00000470600 (TGFBR3-005) 91695490-91712363 retained_intron
ENST00000525962 (TGFBR3-006) 91682430-91861593 protein_coding
ENST00000529608 (TGFBR3-010) 91719893-91727918 retained_intron
ENST00000532540 (TGFBR3-008) 91682647-91885932 nonsense_mediated_decay
ENST00000533089 (TGFBR3-007) 91680343-91862046 nonsense_mediated_decay
ENST00000533370 (TGFBR3-003) 91863839-91886151 processed_transcript
ENSG00000137948 (BRDT)
bromodomain, testis-specific 		ENST00000355011 (BRDT-008) 91949401-91962796 protein_coding
ENST00000362005 (BRDT-001) 91949371-92014421 protein_coding
ENST00000370389 (BRDT-002) 91949371-92014421 protein_coding
ENST00000394530 (BRDT-201) 91949371-92014426 protein_coding
ENST00000399546 (BRDT-202) 91949371-92014426 protein_coding
ENST00000402388 (BRDT-006) 91952162-92014421 protein_coding
ENST00000423434 (BRDT-004) 91949372-91976350 protein_coding
ENST00000426141 (BRDT-005) 91949401-91980743 protein_coding
ENST00000427104 (BRDT-012) 91949398-91976286 protein_coding
ENST00000440509 (BRDT-003) 91949384-91976421 protein_coding
ENST00000448194 (BRDT-013) 91949401-91976286 protein_coding
ENST00000449584 (BRDT-007) 91949398-91962910 protein_coding
ENST00000450792 (BRDT-016) 91949403-91964722 protein_coding
ENST00000457265 (BRDT-017) 91949434-91962849 protein_coding
ENST00000461218 (BRDT-011) 91949398-91950299 processed_transcript
ENST00000470955 (BRDT-009) 91949398-91950302 processed_transcript
ENST00000476711 (BRDT-010) 91949398-91950332 processed_transcript
ENST00000484781 (BRDT-018) 91977081-91979603 processed_transcript
ENST00000484833 (BRDT-015) 91949403-91950312 processed_transcript
ENST00000548992 (BRDT-019) 91949403-91964735 protein_coding
ENST00000552654 (BRDT-020) 91949403-91968224 protein_coding
ENSG00000239794 (RN7SL653P)
RNA, 7SL, cytoplasmic 653, pseudogene 		ENST00000494134 (RN7SL653P-201) 91829774-91830066 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0005ZR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029287-ENSMUSG00000029279 CGP 10090 5:107106570-107387058
GeneTranscriptPositionBiotype
ENSMUSG00000029279 (Brdt)
bromodomain, testis-specific 		ENSMUST00000031215 (Brdt-001) 107331159-107387058 protein_coding
ENSMUST00000112677 (Brdt-003) 107331175-107350741 protein_coding
ENSMUST00000161377 (Brdt-004) 107331192-107342075 processed_transcript
ENSMUST00000162804 (Brdt-002) 107359837-107386361 processed_transcript
ENSMUSG00000029287 (Tgfbr3)
transforming growth factor, beta receptor III 		ENSMUST00000031224 (Tgfbr3-001) 107106570-107289629 protein_coding
ENSMUST00000136882 (Tgfbr3-004) 107118197-107132923 protein_coding
ENSMUST00000138469 (Tgfbr3-003) 107109281-107192367 processed_transcript
ENSMUST00000146591 (Tgfbr3-002) 107147980-107289595 retained_intron
ENSMUSG00000081798 (Gm8152)
predicted gene 8152 		ENSMUST00000120842 (Gm8152-001) 107381381-107382017 processed_pseudogene
ENSMUSG00000084218 (Gm8145)
predicted gene 8145 		ENSMUST00000118220 (Gm8145-001) 107241623-107242367 processed_pseudogene
ENSMUSG00000088429 (Gm22557)
predicted gene, 22557 		ENSMUST00000157804 (Gm22557-201) 107302946-107303047 snRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005ZR_0001ENSG00000069702ENST00000212355ENST00000465892ENST00000532540ENSG00000137948ENST00000355011ENST00000370389ENST00000394530ENST00000402388ENST00000426141ENST00000449584ENST00000450792ENST00000457265ENST00000484781ENST00000552654ENSG00000239794ENST00000494134CIL_0005ZR_0002ENSMUSG00000029279ENSMUST00000031215ENSMUST00000112677ENSMUST00000162804ENSMUSG00000029287ENSMUST00000031224ENSMUST00000138469ENSMUST00000146591ENSMUSG00000081798ENSMUST00000120842ENSMUSG00000084218ENSMUST00000118220ENSMUSG00000088429ENSMUST00000157804
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000069702 ENST00000212355 41.466±0.00 5.845±0.00 N/A 0.838±0.07 9.879±2.53 9.559±7.69 3.820±1.78 3.289±1.46 4.815±3.67 16.557±9.15 3.066±0.00 16.003±20.85 7.588±0.07 3.345±1.97
ENST00000370399 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000417833 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465892 N/A N/A 7.189±0.00 0.611±0.00 4.172±0.00 3.487±0.00 1.297±0.00 1.345±0.00 16.486±0.00 7.240±0.00 2.149±0.00 7.283±0.00 N/A N/A
ENST00000468996 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470600 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525962 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529608 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532540 N/A N/A N/A N/A N/A 2.005±0.00 N/A N/A N/A N/A 1.044±0.00 0.706±0.00 N/A N/A
ENST00000533089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000137948 ENST00000355011 N/A 0.159±0.00 N/A 0.234±0.00 0.125±0.00 0.152±0.00 0.117±0.00 0.294±0.00 0.037±0.00 N/A 0.036±0.00 0.043±0.00 N/A N/A
ENST00000362005 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000370389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.347±0.00
ENST00000394530 N/A 0.020±0.00 N/A 0.048±0.00 0.003±0.00 N/A N/A N/A N/A N/A N/A N/A 0.024±0.00 21.722±0.00
ENST00000399546 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000402388 0.025±0.00 N/A N/A N/A 0.005±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 19.201±0.00
ENST00000423434 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000426141 N/A N/A N/A N/A N/A 0.012±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427104 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440509 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449584 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.139±0.00 N/A 0.067±0.00 N/A N/A
ENST00000450792 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.016±0.00 N/A N/A N/A N/A
ENST00000457265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.089±0.02 N/A N/A
ENST00000461218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470955 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476711 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484781 0.033±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484833 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548992 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552654 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.077±0.00 N/A
ENSG00000239794 ENST00000494134 0.185±0.00 N/A 0.363±0.00 N/A 1.003±0.87 N/A 1.060±0.94 N/A 0.985±0.86 3.421±0.00 N/A 2.486±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029279 ENSMUST00000031215 0.360±0.15 1.195±0.74 N/A 0.891±0.67 0.476±0.29 0.700±0.25 0.087±0.02 0.173±0.08 0.098±0.09 0.517±0.00 0.159±0.02 1.139±0.77 0.115±0.08 11.727±3.45
ENSMUST00000112677 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.060±0.00 47.356±7.53
ENSMUST00000161377 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162804 0.552±0.16 0.854±0.23 0.553±0.04 1.137±0.55 1.045±0.00 0.498±0.00 0.110±0.05 0.247±0.10 0.285±0.24 0.311±0.10 0.444±0.15 0.992±0.66 0.127±0.05 N/A
ENSMUSG00000029287 ENSMUST00000031224 26.401±2.02 34.605±3.97 23.072±2.43 1.267±0.34 18.926±6.28 4.969±1.39 10.926±0.53 11.938±0.31 2.612±1.08 22.879±0.41 3.066±0.92 18.546±5.31 21.008±5.67 1.736±1.09
ENSMUST00000136882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138469 N/A 20.758±4.11 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.671±0.04
ENSMUST00000146591 N/A 68.272±12.93 N/A N/A 21.518±0.97 5.410±1.19 N/A N/A 0.741±0.00 12.958±1.43 N/A 17.972±3.33 N/A 1.843±0.00
ENSMUSG00000081798 ENSMUST00000120842 0.489±0.14 0.643±0.00 N/A 0.378±0.13 0.495±0.24 0.264±0.17 0.113±0.05 0.255±0.13 0.183±0.20 0.499±0.02 0.084±0.00 1.780±1.61 0.038±0.00 0.585±0.09
ENSMUSG00000084218 ENSMUST00000118220 N/A 0.298±0.09 N/A N/A 0.847±0.32 0.144±0.00 0.182±0.07 0.180±0.06 0.092±0.07 0.522±0.07 0.055±0.00 0.887±0.50 N/A 0.128±0.00
ENSMUSG00000088429 ENSMUST00000157804 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 139.930±0.00 N/A

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