C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif containing 54
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380075 TRIM54-002 ENSG00000138100 9606 + 2:27282392-27307435 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLungMuscleOvaryPlacentaTestisENST00000380075
Transcript ID Brain Breast Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000380075 0.207±0.00 3.084±2.55 42.864±30.03 1.027±0.00 0.275±0.00 85.273±49.30 0.148±0.00 0.249±0.20 7.322±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EE CIL_0000EE_0001 CGP 2:27275421-27307439
CIL_0000ED CIL_0000ED_0001 CGP 2:27282392-27308445

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004871 NAS signal transducer activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005737 IEA cytoplasm
GO:0005874 NAS microtubule
GO:0007017 NAS microtubule-based process
GO:0007026 NAS negative regulation of microtubule depolymerization
GO:0007165 NAS signal transduction
GO:0007275 IEA multicellular organismal development
GO:0008270 NAS:IEA zinc ion binding
GO:0030154 IEA cell differentiation
GO:0046417 IEA chorismate metabolic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114637 Trim54-002 protein_coding Mus_musculus 0 1410
ENSMUST00000013771 Trim54-001 protein_coding Mus_musculus 0 1387

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