C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif containing 54
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000296098 TRIM54-001 ENSG00000138100 9606 + 2:27282462-27307439 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyOvaryPlacentaTestisENST00000296098
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Ovary Placenta Testis
ENST00000296098 0.070±0.00 0.243±0.00 0.486±0.00 1.464±0.00 0.128±0.00 0.293±0.00 0.041±0.00 0.031±0.00 2.284±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EE CIL_0000EE_0001 CGP 2:27275421-27307439
CIL_0000ED CIL_0000ED_0001 CGP 2:27282392-27308445

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004871 NAS signal transducer activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005737 IEA cytoplasm
GO:0005874 NAS microtubule
GO:0005875 IEA microtubule associated complex
GO:0007017 NAS microtubule-based process
GO:0007026 NAS negative regulation of microtubule depolymerization
GO:0007165 NAS signal transduction
GO:0007275 IEA multicellular organismal development
GO:0008017 IEA microtubule binding
GO:0008270 NAS:IEA zinc ion binding
GO:0030154 IEA cell differentiation
GO:0046417 IEA chorismate metabolic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114637 Trim54-002 protein_coding Mus_musculus 0 745
ENSMUST00000013771 Trim54-001 protein_coding Mus_musculus 0 745

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