C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: myoferlin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000138119 MYOF 9606 - 10:93306429-93482317 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000358334 MYOF-004 93306430-93482194 protein_coding
  ENST00000359263 MYOF-005 93306430-93482194 protein_coding
  ENST00000371488 MYOF-002 93425741-93482194 protein_coding
  ENST00000371489 MYOF-003 93397185-93482317 protein_coding
  ENST00000463743 MYOF-006 93306429-93379987 nonsense_mediated_decay
  ENST00000474161 MYOF-009 93323118-93323675 retained_intron
  ENST00000475358 MYOF-007 93337528-93340249 processed_transcript
  ENST00000485212 MYOF-008 93324270-93329773 processed_transcript
  ENST00000488645 MYOF-001 93426071-93482194 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000358334ENST00000359263ENST00000463743
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000358334 N/A N/A 0.738±0.00 N/A 1.687±0.00 N/A N/A 0.056±0.00 0.182±0.00 1.242±0.00 N/A 1.449±0.00 3.829±0.00 N/A
ENST00000359263 15.542±0.00 6.485±0.00 0.714±0.00 0.439±0.25 7.810±0.22 6.077±2.85 2.870±0.00 7.925±0.00 4.513±4.23 2.458±0.42 1.697±0.00 5.390±0.70 10.418±2.95 6.082±0.00
ENST00000463743 5.782±0.00 3.246±0.00 0.643±0.00 0.330±0.00 7.799±0.00 4.730±0.00 2.876±0.00 3.727±0.00 0.154±0.00 4.322±0.00 0.634±0.00 2.972±0.86 6.079±1.56 3.445±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000ZY CIL_0000ZY_0001 CGP 10:93073475-93482317
CIL_0000ZZ CIL_0000ZZ_0001 CGP 10:93306429-93529092

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001778 ISS plasma membrane repair
GO:0005515 IPI:IEA protein binding
GO:0005543 ISS phospholipid binding
GO:0005635 TAS nuclear envelope
GO:0005886 IDA plasma membrane
GO:0005901 ISS caveola
GO:0006936 TAS muscle contraction
GO:0008015 TAS blood circulation
GO:0016021 IEA integral component of membrane
GO:0030947 IEA regulation of vascular endothelial growth factor receptor signaling pathway
GO:0031410 IDA cytoplasmic vesicle
GO:0034605 IEA cellular response to heat
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006112 myof myoferlin protein_coding Danio_rerio
ENSDARG00000017128 MYOF Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000048612 Myof myoferlin protein_coding Mus_musculus

Loading