C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myoferlin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000359263 MYOF-005 ENSG00000138119 9606 - 10:93306430-93482194 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000359263
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000359263 15.542±0.00 6.485±0.00 0.714±0.00 0.439±0.25 7.810±0.22 6.077±2.85 2.870±0.00 7.925±0.00 4.513±4.23 2.458±0.42 1.697±0.00 5.390±0.70 10.418±2.95 6.082±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000ZY CIL_0000ZY_0001 CGP 10:93073475-93482317
CIL_0000ZZ CIL_0000ZZ_0001 CGP 10:93306429-93529092

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001778 ISS plasma membrane repair
GO:0005515 IPI:IEA protein binding
GO:0005543 ISS phospholipid binding
GO:0005635 TAS nuclear envelope
GO:0005886 IDA plasma membrane
GO:0005901 ISS caveola
GO:0006936 TAS muscle contraction
GO:0008015 TAS blood circulation
GO:0016021 IEA integral component of membrane
GO:0030947 IEA regulation of vascular endothelial growth factor receptor signaling pathway
GO:0031410 IDA cytoplasmic vesicle
GO:0034605 IEA cellular response to heat
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041475 Myof-201 protein_coding Mus_musculus 0 5840
ENSMUST00000172095 Myof-202 protein_coding Mus_musculus 0 5801
ENSDART00000026000 MYOF-201 protein_coding Danio_rerio 2e-33 150

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