C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myoferlin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000358334 MYOF-004 ENSG00000138119 9606 - 10:93306430-93482194 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastKidneyLiverLungOvaryPlacentaENST00000358334
Transcript ID Bladder Breast Kidney Liver Lung Ovary Placenta
ENST00000358334 0.738±0.00 1.687±0.00 0.056±0.00 0.182±0.00 1.242±0.00 1.449±0.00 3.829±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000ZY CIL_0000ZY_0001 CGP 10:93073475-93482317
CIL_0000ZZ CIL_0000ZZ_0001 CGP 10:93306429-93529092

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001778 ISS plasma membrane repair
GO:0005515 IPI:IEA protein binding
GO:0005543 ISS phospholipid binding
GO:0005635 TAS nuclear envelope
GO:0005886 IDA plasma membrane
GO:0005901 ISS caveola
GO:0006936 TAS muscle contraction
GO:0008015 TAS blood circulation
GO:0016021 IEA integral component of membrane
GO:0031410 IDA cytoplasmic vesicle
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041475 Myof-201 protein_coding Mus_musculus 0 7552
ENSMUST00000172095 Myof-202 protein_coding Mus_musculus 0 7513
ENSDART00000026000 MYOF-201 protein_coding Danio_rerio 2e-33 150

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