C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TAR (HIV-1) RNA binding protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000139546 TARBP2 9606 + 12:53500921-53506431 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000266987 TARBP2-001 53500926-53506431 protein_coding
  ENST00000394357 TARBP2-009 53501619-53506412 protein_coding
  ENST00000456234 TARBP2-006 53500953-53506424 protein_coding
  ENST00000546763 TARBP2-018 53503714-53504787 retained_intron
  ENST00000546889 TARBP2-003 53501305-53502920 retained_intron
  ENST00000547064 TARBP2-015 53501366-53505793 nonsense_mediated_decay
  ENST00000547388 TARBP2-010 53501332-53503472 retained_intron
  ENST00000547541 TARBP2-013 53503474-53504719 retained_intron
  ENST00000548971 TARBP2-005 53501306-53506399 nonsense_mediated_decay
  ENST00000549028 TARBP2-020 53501599-53503549 processed_transcript
  ENST00000549572 TARBP2-007 53501604-53506423 nonsense_mediated_decay
  ENST00000549610 TARBP2-002 53501302-53504395 retained_intron
  ENST00000549679 TARBP2-008 53501605-53506396 nonsense_mediated_decay
  ENST00000550147 TARBP2-004 53500921-53506431 nonsense_mediated_decay
  ENST00000550407 TARBP2-016 53502051-53506396 protein_coding
  ENST00000551157 TARBP2-017 53502603-53505731 retained_intron
  ENST00000551741 TARBP2-022 53501591-53505851 nonsense_mediated_decay
  ENST00000552650 TARBP2-012 53501350-53503698 retained_intron
  ENST00000552817 TARBP2-011 53501597-53505686 protein_coding
  ENST00000552857 TARBP2-021 53501274-53506229 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000266987ENST00000394357ENST00000456234ENST00000546763ENST00000546889ENST00000547064ENST00000548971ENST00000549572ENST00000549610ENST00000550147ENST00000550407ENST00000551157ENST00000551741ENST00000552650ENST00000552817ENST00000552857
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000266987 N/A 3.644±0.00 N/A N/A 2.932±0.00 1.470±0.00 1.936±0.00 N/A 2.541±0.00 0.954±0.00 N/A 5.787±3.60 6.053±1.15 3.893±0.35
ENST00000394357 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.266±0.00 N/A 6.298±1.61 N/A
ENST00000456234 N/A N/A N/A N/A N/A 2.098±0.00 N/A 5.553±0.00 2.852±0.00 N/A N/A 5.767±0.00 5.950±2.09 7.382±0.00
ENST00000546763 N/A N/A N/A N/A 1.196±0.00 N/A N/A 0.270±0.00 0.087±0.00 1.199±0.00 N/A 1.975±1.29 N/A N/A
ENST00000546889 N/A N/A N/A N/A N/A 0.430±0.00 0.321±0.00 N/A 0.290±0.00 0.600±0.00 N/A N/A N/A N/A
ENST00000547064 1.884±0.00 N/A N/A N/A 3.843±0.00 N/A N/A 6.185±0.00 N/A 1.594±0.00 N/A N/A N/A N/A
ENST00000548971 N/A N/A N/A 1.706±0.00 N/A N/A N/A 4.063±0.00 3.403±0.00 1.114±0.00 N/A N/A N/A 4.880±0.00
ENST00000549572 0.910±0.00 N/A 0.703±0.00 N/A N/A N/A N/A N/A 1.501±0.00 N/A N/A N/A N/A N/A
ENST00000549610 N/A N/A 0.621±0.00 1.056±0.00 N/A 1.055±0.00 N/A 0.550±0.00 0.071±0.00 N/A N/A 0.335±0.00 N/A N/A
ENST00000550147 N/A N/A N/A N/A N/A N/A N/A 4.842±0.00 N/A N/A 0.590±0.00 4.087±1.72 N/A N/A
ENST00000550407 N/A N/A N/A N/A N/A N/A 0.845±0.00 N/A N/A 1.105±0.00 1.984±0.00 2.689±0.00 5.440±1.40 3.171±0.00
ENST00000551157 N/A N/A N/A N/A 0.874±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551741 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.989±0.00 N/A N/A
ENST00000552650 N/A N/A N/A N/A N/A N/A N/A N/A 0.102±0.00 N/A N/A N/A N/A N/A
ENST00000552817 N/A N/A N/A N/A 1.208±0.00 N/A 0.285±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000552857 N/A N/A N/A N/A 3.318±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0001 VISTA 12:53396852-53997557

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003725 IEA double-stranded RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006417 IEA regulation of translation
GO:0006469 TAS negative regulation of protein kinase activity
GO:0010467 TAS gene expression
GO:0016442 IEA:IDA RISC complex
GO:0030422 IEA:IDA production of siRNA involved in RNA interference
GO:0030423 IMP targeting of mRNA for destruction involved in RNA interference
GO:0031054 IEA:IDA pre-miRNA processing
GO:0035068 IEA micro-ribonucleoprotein complex
GO:0035197 IEA:IDA siRNA binding
GO:0035198 IEA miRNA binding
GO:0035280 IEA:IDA miRNA loading onto RISC involved in gene silencing by miRNA
GO:0042803 IPI protein homodimerization activity
GO:0045070 IDA positive regulation of viral genome replication
GO:0046782 IEA:IDA regulation of viral transcription
GO:0050689 IDA negative regulation of defense response to virus by host

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070471 tarbp2 TAR (HIV) RNA binding protein 2 protein_coding Danio_rerio
ENSMUSG00000023051 Tarbp2 TAR (HIV) RNA binding protein 2 protein_coding Mus_musculus

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