C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAR (HIV-1) RNA binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000549572 TARBP2-007 ENSG00000139546 9606 + 12:53501604-53506423 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderLiverENST00000549572
Transcript ID Adipose Bladder Liver
ENST00000549572 0.910±0.00 0.703±0.00 1.501±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0001 VISTA 12:53396852-53997557

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003725 IEA double-stranded RNA binding
GO:0005634 IDA nucleus
GO:0016442 IEA RISC complex
GO:0030422 IEA production of siRNA involved in RNA interference
GO:0031054 IEA pre-miRNA processing
GO:0035197 IEA siRNA binding
GO:0035280 IEA miRNA loading onto RISC involved in gene silencing by miRNA
GO:0046782 IEA regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023813 Tarbp2-001 protein_coding Mus_musculus 0 859
ENSMUST00000100168 Tarbp2-003 protein_coding Mus_musculus 0 859
ENSMUST00000142194 Tarbp2-012 protein_coding Mus_musculus 0 693
ENSMUST00000146756 Tarbp2-013 protein_coding Mus_musculus 0 651
ENSMUST00000154948 Tarbp2-010 processed_transcript Mus_musculus 0 551
ENSMUST00000131184 Tarbp2-002 nonsense_mediated_decay Mus_musculus 0 499
ENSMUST00000141266 Tarbp2-005 retained_intron Mus_musculus 0 453
ENSMUST00000149200 Tarbp2-011 nonsense_mediated_decay Mus_musculus 0 322
ENSMUST00000150393 Tarbp2-007 protein_coding Mus_musculus 0 307
ENSMUST00000154451 Tarbp2-006 retained_intron Mus_musculus 0 279
ENSMUST00000134033 Tarbp2-009 retained_intron Mus_musculus 0 274
ENSMUST00000136968 Tarbp2-004 retained_intron Mus_musculus 0 207
ENSDART00000103455 tarbp2-001 protein_coding Danio_rerio 1e-19 102

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