C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAR (HIV-1) RNA binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000456234 TARBP2-006 ENSG00000139546 9606 + 12:53500953-53506424 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonKidneyLiverOvaryPlacentaTestisENST00000456234
Transcript ID Colon Kidney Liver Ovary Placenta Testis
ENST00000456234 2.098±0.00 5.553±0.00 2.852±0.00 5.767±0.00 5.950±2.09 7.382±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0001 VISTA 12:53396852-53997557

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003725 IEA double-stranded RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006417 IEA regulation of translation
GO:0006469 TAS negative regulation of protein kinase activity
GO:0010467 TAS gene expression
GO:0016442 IEA:IDA RISC complex
GO:0030422 IEA:IDA production of siRNA involved in RNA interference
GO:0030423 IMP targeting of mRNA for destruction involved in RNA interference
GO:0031054 IEA:IDA pre-miRNA processing
GO:0035197 IEA:IDA siRNA binding
GO:0035198 IEA miRNA binding
GO:0035280 IEA:IDA miRNA loading onto RISC involved in gene silencing by miRNA
GO:0042803 IPI protein homodimerization activity
GO:0045070 IDA positive regulation of viral genome replication
GO:0046782 IEA:IDA regulation of viral transcription
GO:0050689 IDA negative regulation of defense response to virus by host

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023813 Tarbp2-001 protein_coding Mus_musculus 0 1498
ENSMUST00000154948 Tarbp2-010 processed_transcript Mus_musculus 0 1086
ENSMUST00000100168 Tarbp2-003 protein_coding Mus_musculus 0 1059
ENSMUST00000142194 Tarbp2-012 protein_coding Mus_musculus 0 976
ENSMUST00000146756 Tarbp2-013 protein_coding Mus_musculus 0 931
ENSMUST00000131184 Tarbp2-002 nonsense_mediated_decay Mus_musculus 0 695
ENSMUST00000141266 Tarbp2-005 retained_intron Mus_musculus 0 446
ENSMUST00000150393 Tarbp2-007 protein_coding Mus_musculus 0 307
ENSMUST00000154451 Tarbp2-006 retained_intron Mus_musculus 0 272
ENSMUST00000149200 Tarbp2-011 nonsense_mediated_decay Mus_musculus 0 267
ENSMUST00000134033 Tarbp2-009 retained_intron Mus_musculus 0 267
ENSMUST00000136968 Tarbp2-004 retained_intron Mus_musculus 0 207
ENSDART00000103455 tarbp2-001 protein_coding Danio_rerio 9e-20 102

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