C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAR (HIV-1) RNA binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000549610 TARBP2-002 ENSG00000139546 9606 + 12:53501302-53504395 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonKidneyLiverOvaryENST00000549610
Transcript ID Bladder Brain Colon Kidney Liver Ovary
ENST00000549610 0.621±0.00 1.056±0.00 1.055±0.00 0.550±0.00 0.071±0.00 0.335±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0001 VISTA 12:53396852-53997557

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023813 Tarbp2-001 protein_coding Mus_musculus 0 752
ENSMUST00000141266 Tarbp2-005 retained_intron Mus_musculus 0 689
ENSMUST00000142194 Tarbp2-012 protein_coding Mus_musculus 0 545
ENSMUST00000146756 Tarbp2-013 protein_coding Mus_musculus 0 545
ENSMUST00000131184 Tarbp2-002 nonsense_mediated_decay Mus_musculus 0 510
ENSMUST00000154948 Tarbp2-010 processed_transcript Mus_musculus 0 507
ENSMUST00000154451 Tarbp2-006 retained_intron Mus_musculus 0 431
ENSMUST00000134033 Tarbp2-009 retained_intron Mus_musculus 0 318
ENSMUST00000150393 Tarbp2-007 protein_coding Mus_musculus 0 278
ENSMUST00000149200 Tarbp2-011 nonsense_mediated_decay Mus_musculus 0 274
ENSMUST00000136968 Tarbp2-004 retained_intron Mus_musculus 0 243
ENSMUST00000100168 Tarbp2-003 protein_coding Mus_musculus 0 243

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