C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAR (HIV-1) RNA binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000550407 TARBP2-016 ENSG00000139546 9606 + 12:53502051-53506396 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartLungMuscleOvaryPlacentaTestisENST00000550407
Transcript ID Heart Lung Muscle Ovary Placenta Testis
ENST00000550407 0.845±0.00 1.105±0.00 1.984±0.00 2.689±0.00 5.440±1.40 3.171±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0001 VISTA 12:53396852-53997557

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000142194 Tarbp2-012 protein_coding Mus_musculus 0 745
ENSMUST00000146756 Tarbp2-013 protein_coding Mus_musculus 0 745
ENSMUST00000023813 Tarbp2-001 protein_coding Mus_musculus 0 745
ENSMUST00000154948 Tarbp2-010 processed_transcript Mus_musculus 0 641
ENSMUST00000100168 Tarbp2-003 protein_coding Mus_musculus 0 568
ENSMUST00000141266 Tarbp2-005 retained_intron Mus_musculus 0 394
ENSMUST00000150393 Tarbp2-007 protein_coding Mus_musculus 0 307
ENSMUST00000154451 Tarbp2-006 retained_intron Mus_musculus 0 220
ENSMUST00000149200 Tarbp2-011 nonsense_mediated_decay Mus_musculus 0 215
ENSMUST00000134033 Tarbp2-009 retained_intron Mus_musculus 0 215
ENSMUST00000131184 Tarbp2-002 nonsense_mediated_decay Mus_musculus 0 215
ENSMUST00000136968 Tarbp2-004 retained_intron Mus_musculus 0 209
ENSDART00000103455 tarbp2-001 protein_coding Danio_rerio 7e-20 102

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