C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: breast carcinoma amplified sequence 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141376 BCAS3 9606 + 17:60677453-61392838 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000390652 BCAS3-001 60677889-61392838 protein_coding
  ENST00000407086 BCAS3-002 60677872-61392831 protein_coding
  ENST00000408905 BCAS3-013 60679458-61392831 protein_coding
  ENST00000585744 BCAS3-005 60887050-61392125 protein_coding
  ENST00000585812 BCAS3-008 61157456-61392831 processed_transcript
  ENST00000585979 BCAS3-028 61016962-61368342 processed_transcript
  ENST00000586041 BCAS3-025 60889761-60980605 processed_transcript
  ENST00000586241 BCAS3-018 60677892-60874738 nonsense_mediated_decay
  ENST00000586484 BCAS3-023 60887279-60989988 protein_coding
  ENST00000586705 BCAS3-022 60886383-60947253 protein_coding
  ENST00000587002 BCAS3-032 61078441-61368410 protein_coding
  ENST00000587037 BCAS3-027 61002557-61037903 processed_transcript
  ENST00000587294 BCAS3-031 61159362-61392182 processed_transcript
  ENST00000587872 BCAS3-011 61377830-61380572 retained_intron
  ENST00000588008 BCAS3-030 61084505-61087498 processed_transcript
  ENST00000588168 BCAS3-014 60677453-60747282 protein_coding
  ENST00000588462 BCAS3-012 60679458-61392831 protein_coding
  ENST00000588532 BCAS3-017 60677879-60709266 nonsense_mediated_decay
  ENST00000588569 BCAS3-033 61245260-61392273 processed_transcript
  ENST00000588720 BCAS3-010 61388276-61392831 retained_intron
  ENST00000588874 BCAS3-006 60887050-61392830 protein_coding
  ENST00000589222 BCAS3-004 60677852-61392831 protein_coding
  ENST00000589916 BCAS3-020 60677868-60808094 retained_intron
  ENST00000590128 BCAS3-024 60887239-60947352 protein_coding
  ENST00000590352 BCAS3-026 60986857-61015785 processed_transcript
  ENST00000591147 BCAS3-015 60677848-60747279 nonsense_mediated_decay
  ENST00000591371 BCAS3-019 60677857-60747222 processed_transcript
  ENST00000592393 BCAS3-021 60677892-60821775 processed_transcript
  ENST00000592702 BCAS3-009 61245216-61392831 processed_transcript
  ENST00000592827 BCAS3-029 61016964-61074988 processed_transcript
  ENST00000592848 BCAS3-016 60677887-60889742 nonsense_mediated_decay
  ENST00000593004 BCAS3-034 60677866-60720356 processed_transcript
  ENST00000613443 BCAS3-201 60677889-61084567 protein_coding
  ENST00000614888 BCAS3-202 60677889-61084567 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000390652ENST00000407086ENST00000408905ENST00000585744ENST00000585979ENST00000586705ENST00000588462ENST00000588569ENST00000588720ENST00000588874ENST00000589222ENST00000589916ENST00000592827ENST00000614888
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000390652 0.901±0.00 0.938±0.00 N/A 3.633±0.83 N/A N/A 0.611±0.00 N/A N/A N/A 3.535±0.00 N/A 1.372±0.00 2.334±0.00
ENST00000407086 2.842±0.00 N/A N/A 3.450±1.26 N/A 0.982±0.00 1.156±0.00 1.579±0.00 1.512±0.00 N/A N/A 1.795±0.77 1.628±0.52 6.569±0.00
ENST00000408905 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.338±0.30 2.215±0.50 N/A
ENST00000585744 N/A N/A N/A N/A 2.379±0.00 N/A N/A N/A N/A N/A 0.826±0.00 1.364±0.00 2.982±0.00 6.654±0.00
ENST00000585979 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.658±0.00 N/A N/A
ENST00000586705 N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.823±0.00 N/A 5.117±0.00 N/A N/A
ENST00000588462 N/A N/A N/A N/A 1.813±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588569 4.617±0.00 4.105±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588720 N/A N/A 0.736±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588874 N/A 2.532±0.00 1.346±0.00 4.866±0.00 4.910±0.00 2.247±0.84 1.172±0.00 2.662±0.00 2.175±0.00 2.606±0.00 3.406±0.55 1.441±0.60 4.359±1.55 6.252±1.03
ENST00000589222 N/A N/A N/A N/A N/A 1.349±0.00 0.877±0.19 N/A 1.086±0.00 N/A N/A N/A N/A 2.434±0.00
ENST00000589916 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.058±0.00 N/A N/A
ENST00000592827 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.860±0.00 N/A N/A N/A
ENST00000614888 N/A N/A 1.871±0.00 1.738±0.00 3.833±0.00 2.308±0.00 1.263±0.00 0.875±0.00 1.084±0.00 3.826±0.00 N/A 1.601±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000569 CIL_000569_0002 CGP 17:60600183-61392838
CIL_000703 CIL_000703_0001 CGP 17:60677453-61409466

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005881 ISS cytoplasmic microtubule
GO:0007030 ISS Golgi organization
GO:0008134 IPI transcription factor binding
GO:0010595 ISS positive regulation of endothelial cell migration
GO:0010698 IDA acetyltransferase activator activity
GO:0031023 ISS microtubule organizing center organization
GO:0031252 ISS cell leading edge
GO:0032864 ISS activation of Cdc42 GTPase activity
GO:0034259 ISS negative regulation of Rho GTPase activity
GO:0035035 IPI histone acetyltransferase binding
GO:0035148 ISS tube formation
GO:0035257 IPI nuclear hormone receptor binding
GO:0035327 IDA transcriptionally active chromatin
GO:0042393 IDA histone binding
GO:0043085 IDA positive regulation of catalytic activity
GO:0043089 ISS positive regulation of Cdc42 GTPase activity
GO:0045111 ISS intermediate filament cytoskeleton
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048487 IDA beta-tubulin binding
GO:0051491 ISS positive regulation of filopodium assembly
GO:0051895 ISS negative regulation of focal adhesion assembly
GO:0071391 IDA cellular response to estrogen stimulus
GO:0071944 IEA cell periphery
GO:0090316 ISS positive regulation of intracellular protein transport
GO:2000114 ISS regulation of establishment of cell polarity
GO:2000251 ISS positive regulation of actin cytoskeleton reorganization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090764 bcas3 breast carcinoma amplified sequence 3 protein_coding Danio_rerio
ENSMUSG00000059439 Bcas3 breast carcinoma amplified sequence 3 protein_coding Mus_musculus

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