C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: breast carcinoma amplified sequence 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000585744 BCAS3-005 ENSG00000141376 9606 + 17:60887050-61392125 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastMuscleOvaryPlacentaTestisENST00000585744
Transcript ID Breast Muscle Ovary Placenta Testis
ENST00000585744 2.379±0.00 0.826±0.00 1.364±0.00 2.982±0.00 6.654±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000569 CIL_000569_0002 CGP 17:60600183-61392838
CIL_000703 CIL_000703_0001 CGP 17:60677453-61409466

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000074875 Bcas3-201 protein_coding Mus_musculus 0 2671
ENSMUST00000108062 Bcas3-002 protein_coding Mus_musculus 0 2447
ENSMUST00000108061 Bcas3-001 protein_coding Mus_musculus 0 2447
ENSMUST00000142596 Bcas3-005 protein_coding Mus_musculus 0 1421
ENSMUST00000092821 Bcas3-202 protein_coding Mus_musculus 0 1339
ENSMUST00000154396 Bcas3-004 protein_coding Mus_musculus 0 1339
ENSMUST00000092822 Bcas3-006 protein_coding Mus_musculus 0 1116
ENSMUST00000108056 Bcas3-003 protein_coding Mus_musculus 0 1099
ENSMUST00000144276 Bcas3-012 protein_coding Mus_musculus 0 636
ENSMUST00000130343 Bcas3-010 processed_transcript Mus_musculus 0 241
ENSMUST00000145281 Bcas3-008 processed_transcript Mus_musculus 0 230
ENSMUST00000149662 Bcas3-007 protein_coding Mus_musculus 0 230
ENSMUST00000140562 Bcas3-009 processed_transcript Mus_musculus 9.99995e-41 172
ENSMUST00000140215 Bcas3-013 processed_transcript Mus_musculus 6e-28 130

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