C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: breast carcinoma amplified sequence 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000407086 BCAS3-002 ENSG00000141376 9606 + 17:60677872-61392831 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartKidneyLiverOvaryPlacentaTestisENST00000407086
Transcript ID Adipose Brain Colon Heart Kidney Liver Ovary Placenta Testis
ENST00000407086 2.842±0.00 3.450±1.26 0.982±0.00 1.156±0.00 1.579±0.00 1.512±0.00 1.795±0.77 1.628±0.52 6.569±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000569 CIL_000569_0002 CGP 17:60600183-61392838
CIL_000703 CIL_000703_0001 CGP 17:60677453-61409466

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005881 ISS cytoplasmic microtubule
GO:0007030 ISS Golgi organization
GO:0008134 IPI transcription factor binding
GO:0010595 ISS positive regulation of endothelial cell migration
GO:0010698 IDA acetyltransferase activator activity
GO:0031023 ISS microtubule organizing center organization
GO:0031252 ISS cell leading edge
GO:0032864 ISS activation of Cdc42 GTPase activity
GO:0034259 ISS negative regulation of Rho GTPase activity
GO:0035035 IPI histone acetyltransferase binding
GO:0035148 ISS tube formation
GO:0035257 IPI nuclear hormone receptor binding
GO:0035327 IDA transcriptionally active chromatin
GO:0042393 IDA histone binding
GO:0043085 IDA positive regulation of catalytic activity
GO:0043089 ISS positive regulation of Cdc42 GTPase activity
GO:0045111 ISS intermediate filament cytoskeleton
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048487 IDA beta-tubulin binding
GO:0051491 ISS positive regulation of filopodium assembly
GO:0051895 ISS negative regulation of focal adhesion assembly
GO:0071391 IDA cellular response to estrogen stimulus
GO:0090316 ISS positive regulation of intracellular protein transport
GO:2000114 ISS regulation of establishment of cell polarity
GO:2000251 ISS positive regulation of actin cytoskeleton reorganization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000092821 Bcas3-202 protein_coding Mus_musculus 0 3424
ENSMUST00000154396 Bcas3-004 protein_coding Mus_musculus 0 2638
ENSMUST00000108062 Bcas3-002 protein_coding Mus_musculus 0 2104
ENSMUST00000074875 Bcas3-201 protein_coding Mus_musculus 0 2087
ENSMUST00000108061 Bcas3-001 protein_coding Mus_musculus 0 2060
ENSMUST00000108056 Bcas3-003 protein_coding Mus_musculus 0 1897
ENSMUST00000092822 Bcas3-006 protein_coding Mus_musculus 0 1339
ENSMUST00000142596 Bcas3-005 protein_coding Mus_musculus 0 1116
ENSMUST00000144276 Bcas3-012 protein_coding Mus_musculus 0 636
ENSMUST00000130343 Bcas3-010 processed_transcript Mus_musculus 0 268
ENSMUST00000145281 Bcas3-008 processed_transcript Mus_musculus 0 268
ENSMUST00000149662 Bcas3-007 protein_coding Mus_musculus 0 268
ENSMUST00000138423 Bcas3-014 protein_coding Mus_musculus 0 219
ENSMUST00000140562 Bcas3-009 processed_transcript Mus_musculus 2e-40 172
ENSMUST00000140215 Bcas3-013 processed_transcript Mus_musculus 1e-27 130

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