C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear prelamin A recognition factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141562 NARF 9606 + 17:82458180-82490537 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000309794 NARF-001 82458606-82490537 protein_coding
  ENST00000345415 NARF-007 82458649-82488262 protein_coding
  ENST00000374611 NARF-004 82458697-82488263 nonsense_mediated_decay
  ENST00000390006 NARF-006 82458185-82488255 protein_coding
  ENST00000412079 NARF-201 82458664-82488265 protein_coding
  ENST00000457415 NARF-018 82458703-82488215 protein_coding
  ENST00000577410 NARF-016 82458875-82481093 protein_coding
  ENST00000577432 NARF-020 82458724-82484900 protein_coding
  ENST00000577812 NARF-008 82458712-82488259 retained_intron
  ENST00000578082 NARF-021 82458746-82479206 retained_intron
  ENST00000578820 NARF-024 82484808-82488259 retained_intron
  ENST00000579083 NARF-017 82468499-82478827 retained_intron
  ENST00000579198 NARF-010 82458180-82468799 protein_coding
  ENST00000580296 NARF-013 82458359-82472614 protein_coding
  ENST00000580748 NARF-015 82458754-82468787 nonsense_mediated_decay
  ENST00000581202 NARF-005 82458664-82483816 nonsense_mediated_decay
  ENST00000581743 NARF-025 82458714-82479993 processed_transcript
  ENST00000581795 NARF-003 82458711-82484321 nonsense_mediated_decay
  ENST00000582585 NARF-002 82458698-82461014 nonsense_mediated_decay
  ENST00000582907 NARF-019 82458726-82488065 nonsense_mediated_decay
  ENST00000583181 NARF-011 82458194-82468863 processed_transcript
  ENST00000583908 NARF-023 82484539-82488258 retained_intron
  ENST00000584192 NARF-012 82458228-82468896 processed_transcript
  ENST00000584411 NARF-014 82458711-82472618 protein_coding
  ENST00000584445 NARF-009 82480468-82488262 retained_intron
  ENST00000584513 NARF-022 82481081-82488062 protein_coding
  ENST00000584965 NARF-026 82480999-82488261 retained_intron

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000309794ENST00000345415ENST00000374611ENST00000390006ENST00000412079ENST00000457415ENST00000577432ENST00000577812ENST00000578820ENST00000579083ENST00000580296ENST00000581743ENST00000582907ENST00000584411ENST00000584445
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000309794 N/A 3.871±0.00 N/A 0.513±0.00 N/A N/A 0.370±0.00 1.605±0.00 N/A N/A 0.557±0.00 1.586±0.00 0.743±0.00 5.844±1.55
ENST00000345415 N/A N/A N/A N/A N/A 0.805±0.00 0.634±0.00 N/A N/A N/A 3.046±0.00 3.779±3.08 3.125±0.28 10.117±0.00
ENST00000374611 4.272±0.00 N/A N/A 6.007±0.00 5.588±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000390006 7.109±0.00 15.738±0.00 N/A 4.397±3.20 6.055±0.00 13.141±0.00 6.789±6.14 8.132±0.00 8.506±0.00 5.443±0.00 4.598±3.03 8.385±1.87 7.176±1.33 16.732±0.00
ENST00000412079 N/A N/A N/A 0.853±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457415 N/A N/A N/A N/A 1.391±0.00 N/A N/A N/A N/A N/A 2.744±0.00 N/A N/A N/A
ENST00000577432 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.214±0.00 4.703±0.00 21.566±0.00
ENST00000577812 2.915±0.00 7.482±0.00 N/A 0.557±0.00 2.780±0.00 0.707±0.00 N/A N/A N/A 0.389±0.00 N/A 3.351±2.24 N/A N/A
ENST00000578820 N/A N/A N/A N/A N/A N/A N/A N/A 15.011±0.00 20.952±0.00 6.334±0.00 N/A N/A N/A
ENST00000579083 N/A N/A 6.198±0.00 N/A N/A N/A N/A 2.850±0.00 10.610±0.00 4.832±0.00 N/A N/A N/A N/A
ENST00000580296 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.742±0.00 N/A N/A
ENST00000581743 N/A N/A 0.941±0.00 2.796±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582907 N/A N/A 0.486±0.00 4.655±3.64 1.432±0.00 5.069±3.27 3.920±3.17 2.561±2.11 1.404±0.00 1.405±0.00 N/A 15.964±0.00 4.171±1.09 18.827±7.55
ENST00000584411 N/A N/A N/A N/A N/A 2.200±0.00 2.325±0.00 N/A N/A 2.107±0.00 N/A N/A N/A N/A
ENST00000584445 N/A 6.961±0.00 0.290±0.00 N/A 1.986±1.29 N/A N/A N/A N/A 5.660±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00043T CIL_00043T_0002 CGP 17:82442589-82490537
CIL_00054L CIL_00054L_0001 CGP 17:82458180-82644662

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005521 IPI lamin binding
GO:0005634 IDA nucleus
GO:0005638 IDA lamin filament
GO:0005652 TAS nuclear lamina
GO:0031981 IDA nuclear lumen

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000024184 narf nuclear prelamin A recognition factor protein_coding Danio_rerio
ENSDARG00000071319 narf nuclear prelamin A recognition factor protein_coding Danio_rerio
ENSMUSG00000000056 Narf nuclear prelamin A recognition factor protein_coding Mus_musculus

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